LINC01079

Summary

LINC01079 (long intergenic non-protein coding RNA 1079, HGNC:49122) is a long non-coding RNA gene on chromosome 13q12.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49122
Approved symbol	LINC01079
Name	long intergenic non-protein coding RNA 1079
Location	13q12.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229609
Ensembl biotype	lncRNA
Entrez	106146146
RNAcentral	URS0002A4C2CC — lncRNA, 2275 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000431171, ENST00000833681, ENST00000833682, ENST00000833683, ENST00000833684, ENST00000833685, ENST00000833686, ENST00000833687, ENST00000833688

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000431171 — 2 exons

Exon	Start	End
ENSE00001726771	27373994	27374366
ENSE00001782477	27373348	27373554

Expression profiles

Bgee: expression breadth broad, 65 present calls, max score 72.70.

Top tissues by expression

65 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
body of pancreas	UBERON:0001150	72.70	gold quality
pancreas	UBERON:0001264	68.95	gold quality
rectum	UBERON:0001052	61.57	gold quality
islet of Langerhans	UBERON:0000006	59.54	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	56.50	gold quality
duodenum	UBERON:0002114	54.64	gold quality
prefrontal cortex	UBERON:0000451	51.90	gold quality
monocyte	CL:0000576	51.88	silver quality
vermiform appendix	UBERON:0001154	50.54	gold quality
Brodmann (1909) area 9	UBERON:0013540	49.54	gold quality
blood	UBERON:0000178	49.23	silver quality
liver	UBERON:0002107	48.44	silver quality
gastrocnemius	UBERON:0001388	48.00	silver quality
colon	UBERON:0001155	47.77	gold quality
intestine	UBERON:0000160	47.64	gold quality
transverse colon	UBERON:0001157	47.43	gold quality
right lobe of liver	UBERON:0001114	46.30	silver quality
smooth muscle tissue	UBERON:0001135	46.18	gold quality
small intestine	UBERON:0002108	45.95	gold quality
upper lobe of left lung	UBERON:0008952	45.24	gold quality
minor salivary gland	UBERON:0001830	45.14	silver quality
small intestine Peyer’s patch	UBERON:0003454	44.83	gold quality
skin of leg	UBERON:0001511	44.42	gold quality
muscle layer of sigmoid colon	UBERON:0035805	43.85	gold quality
substantia nigra	UBERON:0002038	43.81	gold quality
esophagus mucosa	UBERON:0002469	43.72	silver quality
stomach	UBERON:0000945	43.34	silver quality
body of stomach	UBERON:0001161	43.24	silver quality
right lobe of thyroid gland	UBERON:0001119	43.08	silver quality
ascending aorta	UBERON:0001496	42.98	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.57

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.