LINC01091

Summary

LINC01091 (long intergenic non-protein coding RNA 1091, HGNC:27721) is a long non-coding RNA gene on chromosome 4q28.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27721
Approved symbol	LINC01091
Name	long intergenic non-protein coding RNA 1091
Location	4q28.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249464
Ensembl biotype	lncRNA
Entrez	285419
RNAcentral	URS0000CCE120 — lncRNA, 1331 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 46 — 46 lncRNA

ENST00000508111, ENST00000511919, ENST00000514823, ENST00000515769, ENST00000655571, ENST00000655892, ENST00000656388, ENST00000657410, ENST00000659080, ENST00000660330, ENST00000661368, ENST00000661665, ENST00000662262, ENST00000662928, ENST00000663714, ENST00000664622, ENST00000666015, ENST00000666328, ENST00000666490, ENST00000666756, ENST00000667041, ENST00000667528, ENST00000668255, ENST00000668501, ENST00000669502, ENST00000669505, ENST00000669933, ENST00000670311, ENST00000670449, ENST00000670628, ENST00000671094, ENST00000671119, ENST00000671260, ENST00000671655, ENST00000684936, ENST00000686783, ENST00000687307, ENST00000688140, ENST00000688429, ENST00000688939, ENST00000689676, ENST00000690721, ENST00000691879, ENST00000692159, ENST00000700999, ENST00000701014

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000508111 — 6 exons

Exon	Start	End
ENSE00002023600	123829095	123829187
ENSE00002059627	123652787	123652902
ENSE00002070522	123661753	123661833
ENSE00002084856	123925184	123925337
ENSE00003876807	123930248	123930778
ENSE00003929412	123650036	123650329

Expression profiles

Bgee: expression breadth ubiquitous, 176 present calls, max score 91.90.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.6796 / max 75.4409, expressed in 164 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
49575	0.3029	82
49576	0.2367	64
49577	0.1400	47

Top tissues by expression

239 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right uterine tube	UBERON:0001302	91.90	gold quality
hindlimb stylopod muscle	UBERON:0004252	87.95	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	85.81	gold quality
deltoid	UBERON:0001476	85.03	gold quality
biceps brachii	UBERON:0001507	82.35	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.84	gold quality
muscle of leg	UBERON:0001383	80.64	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.25	gold quality
right adrenal gland cortex	UBERON:0035827	80.08	gold quality
gastrocnemius	UBERON:0001388	79.93	gold quality
oviduct epithelium	UBERON:0004804	79.25	gold quality
right adrenal gland	UBERON:0001233	79.06	gold quality
left adrenal gland	UBERON:0001234	78.27	gold quality
fallopian tube	UBERON:0003889	77.78	gold quality
left adrenal gland cortex	UBERON:0035825	77.68	gold quality
bronchial epithelial cell	CL:0002328	76.36	gold quality
islet of Langerhans	UBERON:0000006	76.23	gold quality
adrenal cortex	UBERON:0001235	75.55	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	75.21	gold quality
colonic epithelium	UBERON:0000397	75.19	gold quality
adrenal gland	UBERON:0002369	74.95	gold quality
skeletal muscle tissue	UBERON:0001134	74.93	gold quality
bronchus	UBERON:0002185	74.75	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	74.51	gold quality
muscle tissue	UBERON:0002385	73.89	gold quality
right atrium auricular region	UBERON:0006631	73.84	gold quality
calcaneal tendon	UBERON:0003701	73.62	gold quality
right coronary artery	UBERON:0001625	73.05	gold quality
right lung	UBERON:0002167	73.05	gold quality
cardiac atrium	UBERON:0002081	72.99	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.