LINC01093

Summary

LINC01093 (long intergenic non-protein coding RNA 1093, HGNC:49218) is a long non-coding RNA gene on chromosome 4q35.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49218
Approved symbol	LINC01093
Name	long intergenic non-protein coding RNA 1093
Location	4q35.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249173
Ensembl biotype	lncRNA
Entrez	100506229
RNAcentral	URS000075A8B3 — lncRNA, 1529 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 84 — 84 lncRNA

ENST00000506479, ENST00000507183, ENST00000515864, ENST00000653105, ENST00000653828, ENST00000654928, ENST00000656892, ENST00000657719, ENST00000657860, ENST00000659755, ENST00000661671, ENST00000662297, ENST00000663526, ENST00000663695, ENST00000664938, ENST00000665575, ENST00000666149, ENST00000667903, ENST00000668530, ENST00000668573, ENST00000670177, ENST00000671675, ENST00000686074, ENST00000688176, ENST00000688868, ENST00000692071, ENST00000701045, ENST00000701048, ENST00000701519, ENST00000701900, ENST00000701939, ENST00000799052, ENST00000799053, ENST00000799054, ENST00000799055, ENST00000799056, ENST00000799057, ENST00000799058, ENST00000799059, ENST00000799060, ENST00000799061, ENST00000799062, ENST00000799063, ENST00000799064, ENST00000799065, ENST00000799066, ENST00000799067, ENST00000799068, ENST00000799069, ENST00000799070, ENST00000799071, ENST00000799072, ENST00000799073, ENST00000799074, ENST00000799075, ENST00000799076, ENST00000799077, ENST00000799078, ENST00000799079, ENST00000799080, ENST00000799081, ENST00000799082, ENST00000799083, ENST00000799084, ENST00000799085, ENST00000799086, ENST00000799087, ENST00000799088, ENST00000799089, ENST00000799090, ENST00000799091, ENST00000799092, ENST00000799093, ENST00000799094, ENST00000799095, ENST00000799096, ENST00000799097, ENST00000799098, ENST00000799099, ENST00000799100, ENST00000799101, ENST00000799102, ENST00000799103, ENST00000799104

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000506479 — 3 exons

Exon	Start	End
ENSE00002054840	184898621	184898771
ENSE00002067626	184893637	184894140
ENSE00003866467	184897348	184897588

Expression profiles

Bgee: expression breadth ubiquitous, 107 present calls, max score 95.79.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2902 / max 74.8516, expressed in 76 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter ID	TPM avg	Samples expressed
55240	0.1220	37
55237	0.0640	15
55239	0.0628	26
55238	0.0326	12
203447	0.0089	4

Top tissues by expression

200 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of liver	UBERON:0001114	95.79	gold quality
liver	UBERON:0002107	92.58	gold quality
vermiform appendix	UBERON:0001154	70.72	gold quality
bone marrow cell	CL:0002092	68.30	silver quality
corpus epididymis	UBERON:0004359	63.71	gold quality
caecum	UBERON:0001153	63.12	gold quality
blood	UBERON:0000178	60.25	gold quality
leukocyte	CL:0000738	59.35	gold quality
monocyte	CL:0000576	59.34	gold quality
granulocyte	CL:0000094	54.42	gold quality
omental fat pad	UBERON:0010414	53.64	gold quality
adult mammalian kidney	UBERON:0000082	53.60	gold quality
peritoneum	UBERON:0002358	53.60	gold quality
adipose tissue of abdominal region	UBERON:0007808	52.84	gold quality
lower lobe of lung	UBERON:0008949	51.12	silver quality
upper leg skin	UBERON:0004262	50.92	gold quality
buccal mucosa cell	CL:0002336	50.74	gold quality
left coronary artery	UBERON:0001626	49.85	gold quality
prefrontal cortex	UBERON:0000451	49.81	gold quality
prostate gland	UBERON:0002367	49.29	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	49.16	silver quality
islet of Langerhans	UBERON:0000006	48.94	gold quality
descending thoracic aorta	UBERON:0002345	48.91	gold quality
gastrocnemius	UBERON:0001388	48.90	gold quality
coronary artery	UBERON:0001621	48.83	gold quality
spleen	UBERON:0002106	48.47	gold quality
caput epididymis	UBERON:0004358	48.46	gold quality
anatomical system	UBERON:0000467	48.35	gold quality
adipose tissue	UBERON:0001013	48.33	gold quality
subcutaneous adipose tissue	UBERON:0002190	48.31	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Novel Long Noncoding RNAs, LINC01093 and MYLK-AS1, Serve as Potential Diagnostic and Prognostic Biomarkers or Hepatocellular Carcinoma. (PMID:37527208)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.