LINC01097

Summary

LINC01097 (long intergenic non-protein coding RNA 1097, HGNC:27738) is a long non-coding RNA gene on chromosome 4p15.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27738
Approved symbol	LINC01097
Name	long intergenic non-protein coding RNA 1097
Location	4p15.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000281202
Ensembl biotype	lncRNA
Entrez	285547
RNAcentral	URS000075C4B3 — lncRNA, 2122 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000627163, ENST00000627575, ENST00000628853

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000627163 — 4 exons

Exon	Start	End
ENSE00003763688	13528151	13528246
ENSE00003765769	13528922	13529102
ENSE00003769070	13531148	13531417
ENSE00003774721	13526319	13527893

Expression profiles

Bgee: expression breadth broad, 17 present calls, max score 52.78.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0331 / max 14.6347, expressed in 15 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
51409	0.0331	15

Top tissues by expression

163 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
esophagogastric junction muscularis propria	UBERON:0035841	52.78	gold quality
body of stomach	UBERON:0001161	50.40	gold quality
buccal mucosa cell	CL:0002336	47.03	gold quality
upper lobe of lung	UBERON:0008948	46.50	silver quality
prefrontal cortex	UBERON:0000451	43.86	silver quality
muscle layer of sigmoid colon	UBERON:0035805	43.73	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
stomach	UBERON:0000945	43.35	gold quality
islet of Langerhans	UBERON:0000006	43.28	silver quality
transverse colon	UBERON:0001157	43.25	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
colon	UBERON:0001155	42.56	gold quality
large intestine	UBERON:0000059	42.37	gold quality
cortex of kidney	UBERON:0001225	41.99	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	41.78	gold quality
tibial artery	UBERON:0007610	41.70	silver quality
lower esophagus muscularis layer	UBERON:0035833	41.56	gold quality
skeletal muscle tissue	UBERON:0001134	41.43	gold quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
adult mammalian kidney	UBERON:0000082	41.34	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
oviduct epithelium	UBERON:0004804	41.32	gold quality
cardiac ventricle	UBERON:0002082	41.15	gold quality
bone marrow	UBERON:0002371	41.14	gold quality
palpebral conjunctiva	UBERON:0001812	41.10	gold quality
biceps brachii	UBERON:0001507	41.08	gold quality
mucosa of paranasal sinus	UBERON:0005030	40.98	gold quality
fallopian tube	UBERON:0003889	40.92	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.