LINC01098

Summary

LINC01098 (long intergenic non-protein coding RNA 1098, HGNC:27731) is a long non-coding RNA gene on chromosome 4q34.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27731
Approved symbol	LINC01098
Name	long intergenic non-protein coding RNA 1098
Location	4q34.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231171
Ensembl biotype	lncRNA
Entrez	285501
RNAcentral	URS000075A50F — lncRNA, 1039 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000507870, ENST00000666825, ENST00000667514, ENST00000722986, ENST00000722987, ENST00000722988

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507870 — 6 exons

Exon	Start	End
ENSE00001611971	177966675	177966778
ENSE00001713953	177975804	177975943
ENSE00002023565	177990479	177990750
ENSE00002045487	177728757	177729017
ENSE00002051561	177732367	177732479
ENSE00002081501	177960762	177960905

Expression profiles

Bgee: expression breadth broad, 86 present calls, max score 79.59.

Top tissues by expression

190 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.59	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	61.64	gold quality
cortical plate	UBERON:0005343	60.51	gold quality
right testis	UBERON:0004534	59.81	gold quality
left testis	UBERON:0004533	59.43	gold quality
testis	UBERON:0000473	58.71	gold quality
apex of heart	UBERON:0002098	57.21	gold quality
leukocyte	CL:0000738	55.83	gold quality
monocyte	CL:0000576	55.35	gold quality
right lobe of liver	UBERON:0001114	53.53	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.71	gold quality
hindlimb stylopod muscle	UBERON:0004252	50.88	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	49.93	gold quality
islet of Langerhans	UBERON:0000006	49.86	gold quality
corpus callosum	UBERON:0002336	49.33	gold quality
spinal cord	UBERON:0002240	48.85	gold quality
pancreas	UBERON:0001264	48.12	gold quality
liver	UBERON:0002107	47.93	gold quality
prefrontal cortex	UBERON:0000451	47.84	silver quality
gall bladder	UBERON:0002110	47.61	gold quality
muscle of leg	UBERON:0001383	47.15	gold quality
left lobe of thyroid gland	UBERON:0001120	45.70	gold quality
gastrocnemius	UBERON:0001388	45.69	gold quality
adult mammalian kidney	UBERON:0000082	45.38	gold quality
heart left ventricle	UBERON:0002084	45.32	gold quality
upper lobe of left lung	UBERON:0008952	45.04	gold quality
body of pancreas	UBERON:0001150	44.79	silver quality
cardiac ventricle	UBERON:0002082	44.68	gold quality
saliva-secreting gland	UBERON:0001044	44.63	gold quality
right adrenal gland cortex	UBERON:0035827	44.44	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.27

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.