LINC01099

Summary

LINC01099 (long intergenic non-protein coding RNA 1099, HGNC:49222) is a long non-coding RNA gene on chromosome 4q34.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49222
Approved symbol	LINC01099
Name	long intergenic non-protein coding RNA 1099
Location	4q34.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251504
Ensembl biotype	lncRNA
Entrez	101928656
RNAcentral	URS000075CB35 — lncRNA, 1206 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000503093, ENST00000507011, ENST00000512527, ENST00000514736, ENST00000798945, ENST00000833219, ENST00000833220, ENST00000833221

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503093 — 2 exons

Exon	Start	End
ENSE00002030481	177691005	177691068
ENSE00004187048	177686673	177686863

Expression profiles

Bgee: expression breadth ubiquitous, 113 present calls, max score 86.65.

Top tissues by expression

113 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
islet of Langerhans	UBERON:0000006	86.65	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.74	silver quality
sural nerve	UBERON:0015488	68.25	silver quality
placenta	UBERON:0001987	68.19	gold quality
pancreas	UBERON:0001264	67.48	gold quality
descending thoracic aorta	UBERON:0002345	67.30	gold quality
ventricular zone	UBERON:0003053	63.71	gold quality
corpus callosum	UBERON:0002336	61.58	gold quality
thoracic aorta	UBERON:0001515	60.55	gold quality
ascending aorta	UBERON:0001496	59.95	gold quality
cortex of kidney	UBERON:0001225	59.74	gold quality
gall bladder	UBERON:0002110	58.99	gold quality
stromal cell of endometrium	CL:0002255	58.64	gold quality
bone marrow	UBERON:0002371	57.10	gold quality
liver	UBERON:0002107	56.85	gold quality
prefrontal cortex	UBERON:0000451	56.23	gold quality
monocyte	CL:0000576	56.20	gold quality
amygdala	UBERON:0001876	56.13	gold quality
body of pancreas	UBERON:0001150	55.54	gold quality
duodenum	UBERON:0002114	55.34	gold quality
apex of heart	UBERON:0002098	54.44	gold quality
kidney	UBERON:0002113	54.12	gold quality
Ammon’s horn	UBERON:0001954	54.09	gold quality
hindlimb stylopod muscle	UBERON:0004252	53.71	gold quality
lymph node	UBERON:0000029	53.41	silver quality
superior frontal gyrus	UBERON:0002661	53.32	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.91	gold quality
adult mammalian kidney	UBERON:0000082	52.77	gold quality
lung	UBERON:0002048	52.68	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	52.43	gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-CURD-119	yes	1652.67
E-GEOD-131882	yes	1496.23
E-ANND-3	no	3.24

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.