LINC01100

Summary

LINC01100 (long intergenic non-protein coding RNA 1100, HGNC:49224) is a long non-coding RNA gene on chromosome 3q25.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49224
Approved symbol	LINC01100
Name	long intergenic non-protein coding RNA 1100
Location	3q25.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000242107
Ensembl biotype	lncRNA
Entrez	730109
RNAcentral	URS000075D2C1 — lncRNA, 629 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000471921, ENST00000740652, ENST00000740653

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000471921 — 5 exons

Exon	Start	End
ENSE00001845307	160016024	160016080
ENSE00001845490	160019137	160019198
ENSE00001846772	160020646	160020744
ENSE00001938628	160031179	160031423
ENSE00001946521	160026610	160026886

Expression profiles

Bgee: expression breadth broad, 48 present calls, max score 83.32.

Top tissues by expression

48 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.32	gold quality
small intestine	UBERON:0002108	71.88	silver quality
pancreas	UBERON:0001264	65.46	silver quality
lower esophagus mucosa	UBERON:0035834	63.02	gold quality
esophagus	UBERON:0001043	56.76	gold quality
esophagus mucosa	UBERON:0002469	56.64	gold quality
minor salivary gland	UBERON:0001830	56.25	gold quality
lower esophagus muscularis layer	UBERON:0035833	56.06	gold quality
monocyte	CL:0000576	54.63	gold quality
endometrium	UBERON:0001295	53.53	gold quality
body of uterus	UBERON:0009853	52.77	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	52.04	gold quality
vagina	UBERON:0000996	51.74	gold quality
lung	UBERON:0002048	50.44	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	49.25	gold quality
blood	UBERON:0000178	49.00	silver quality
prefrontal cortex	UBERON:0000451	47.99	silver quality
left ovary	UBERON:0002119	46.67	gold quality
fallopian tube	UBERON:0003889	45.09	gold quality
primary visual cortex	UBERON:0002436	44.92	silver quality
zone of skin	UBERON:0000014	44.66	gold quality
right lobe of thyroid gland	UBERON:0001119	44.58	silver quality
Brodmann (1909) area 9	UBERON:0013540	44.10	gold quality
skin of leg	UBERON:0001511	43.96	gold quality
superior frontal gyrus	UBERON:0002661	43.85	silver quality
stomach	UBERON:0000945	43.43	gold quality
right testis	UBERON:0004534	43.37	gold quality
frontal cortex	UBERON:0001870	42.95	silver quality
testis	UBERON:0000473	42.91	gold quality
left testis	UBERON:0004533	42.83	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.