LINC01102

Summary

LINC01102 (long intergenic non-protein coding RNA 1102, HGNC:27165) is a long non-coding RNA gene on chromosome 2q12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27165
Approved symbol	LINC01102
Name	long intergenic non-protein coding RNA 1102
Location	2q12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235597
Ensembl biotype	lncRNA
Entrez	150568
RNAcentral	URS000075D0D1 — lncRNA, 1524 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 47 — 47 lncRNA

ENST00000414442, ENST00000429464, ENST00000447380, ENST00000451400, ENST00000652812, ENST00000657293, ENST00000657656, ENST00000658704, ENST00000658830, ENST00000658921, ENST00000659047, ENST00000659098, ENST00000659788, ENST00000660280, ENST00000660572, ENST00000660711, ENST00000661607, ENST00000662105, ENST00000662445, ENST00000663107, ENST00000664680, ENST00000664762, ENST00000664788, ENST00000665210, ENST00000665228, ENST00000666200, ENST00000666546, ENST00000666592, ENST00000666748, ENST00000667436, ENST00000667477, ENST00000669146, ENST00000670569, ENST00000670643, ENST00000670863, ENST00000690368, ENST00000691178, ENST00000691584, ENST00000759177, ENST00000759178, ENST00000759179, ENST00000759180, ENST00000759181, ENST00000759182, ENST00000759183, ENST00000759184, ENST00000759185

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414442 — 2 exons

Exon	Start	End
ENSE00003863134	104505866	104507558
ENSE00003885702	104434308	104434523

Expression profiles

Bgee: expression breadth ubiquitous, 121 present calls, max score 89.42.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.3669 / max 216.2665, expressed in 131 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter ID	TPM avg	Samples expressed
21785	0.8118	108
21787	0.2332	60
21786	0.1767	59
21788	0.0811	38
21789	0.0642	22

Top tissues by expression

200 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ganglionic eminence	UBERON:0004023	89.42	gold quality
cortical plate	UBERON:0005343	87.75	gold quality
ventricular zone	UBERON:0003053	86.61	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	85.58	gold quality
spinal cord	UBERON:0002240	82.83	gold quality
prefrontal cortex	UBERON:0000451	82.06	gold quality
primary visual cortex	UBERON:0002436	81.40	gold quality
Brodmann (1909) area 9	UBERON:0013540	81.36	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	80.46	gold quality
anterior cingulate cortex	UBERON:0009835	79.97	gold quality
right frontal lobe	UBERON:0002810	79.75	gold quality
Brodmann (1909) area 46	UBERON:0006483	78.54	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.45	gold quality
neocortex	UBERON:0001950	78.25	gold quality
corpus callosum	UBERON:0002336	77.74	gold quality
frontal cortex	UBERON:0001870	77.21	gold quality
occipital lobe	UBERON:0002021	77.07	gold quality
substantia nigra	UBERON:0002038	76.19	gold quality
cerebral cortex	UBERON:0000956	75.84	gold quality
caudate nucleus	UBERON:0001873	75.76	gold quality
amygdala	UBERON:0001876	75.22	gold quality
putamen	UBERON:0001874	73.94	gold quality
midbrain	UBERON:0001891	73.12	gold quality
forebrain	UBERON:0001890	73.09	gold quality
hypothalamus	UBERON:0001898	72.85	gold quality
buccal mucosa cell	CL:0002336	71.85	gold quality
Ammon’s horn	UBERON:0001954	70.85	gold quality
brain	UBERON:0000955	70.84	gold quality
nucleus accumbens	UBERON:0001882	70.51	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	69.43	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.24

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.