LINC01107

Summary

LINC01107 (long intergenic non-protein coding RNA 1107, HGNC:49229) is a long non-coding RNA gene on chromosome 2q37.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49229
Approved symbol	LINC01107
Name	long intergenic non-protein coding RNA 1107
Location	2q37.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225493
Ensembl biotype	lncRNA
Entrez	151171
RNAcentral	URS000075AACE — lncRNA, 2420 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000446979, ENST00000748485, ENST00000748486

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000446979 — 3 exons

Exon	Start	End
ENSE00001599965	238554474	238555054
ENSE00001670089	238551411	238551547
ENSE00001727528	238510690	238511946

Expression profiles

Bgee: expression breadth broad, 43 present calls, max score 79.86.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0252 / max 24.3586, expressed in 4 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
34776	0.0202	4
34775	0.0050	3

Top tissues by expression

161 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.86	gold quality
sperm	CL:0000019	61.30	gold quality
sural nerve	UBERON:0015488	57.63	silver quality
hindlimb stylopod muscle	UBERON:0004252	57.38	silver quality
vena cava	UBERON:0004087	55.31	gold quality
heart right ventricle	UBERON:0002080	55.29	gold quality
myocardium	UBERON:0002349	54.37	gold quality
ventral tegmental area	UBERON:0002691	53.64	gold quality
saphenous vein	UBERON:0007318	53.62	gold quality
layer of synovial tissue	UBERON:0007616	53.61	gold quality
adrenal cortex	UBERON:0001235	53.51	gold quality
pericardium	UBERON:0002407	53.50	gold quality
lymph node	UBERON:0000029	53.43	gold quality
thymus	UBERON:0002370	53.29	gold quality
trigeminal ganglion	UBERON:0001675	53.27	gold quality
synovial joint	UBERON:0002217	53.25	gold quality
nipple	UBERON:0002030	53.18	gold quality
corpus callosum	UBERON:0002336	53.16	gold quality
spinal cord	UBERON:0002240	53.14	gold quality
renal medulla	UBERON:0000362	53.07	gold quality
pylorus	UBERON:0001166	53.07	gold quality
coronary artery	UBERON:0001621	52.97	gold quality
substantia nigra pars compacta	UBERON:0001965	52.90	gold quality
medulla oblongata	UBERON:0001896	52.89	gold quality
superior surface of tongue	UBERON:0007371	52.89	gold quality
superior vestibular nucleus	UBERON:0007227	52.84	gold quality
caecum	UBERON:0001153	52.82	gold quality
pons	UBERON:0000988	52.75	gold quality
midbrain	UBERON:0001891	52.69	gold quality
dorsal plus ventral thalamus	UBERON:0001897	52.64	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.