LINC01108

Summary

LINC01108 (long intergenic non-protein coding RNA 1108, HGNC:49234) is a long non-coding RNA gene on chromosome 6p23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49234
Approved symbol	LINC01108
Name	long intergenic non-protein coding RNA 1108
Location	6p23
Locus type	RNA, long non-coding
Status	Approved
Aliases	LncRNA-ES1
Ensembl gene	ENSG00000226673
Ensembl biotype	lncRNA
Entrez	102216342
RNAcentral	URS000075B1D5 — lncRNA, 3697 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000427276, ENST00000635227

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427276 — 2 exons

Exon	Start	End
ENSE00001664780	14285056	14285145
ENSE00001723124	14280127	14283188

Expression profiles

Bgee: expression breadth broad, 66 present calls, max score 69.83.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0283 / max 4.0831, expressed in 17 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
71866	0.0283	17

Top tissues by expression

66 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	69.83	silver quality
uterine cervix	UBERON:0000002	66.12	silver quality
colonic epithelium	UBERON:0000397	59.94	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	56.11	silver quality
adrenal gland	UBERON:0002369	55.80	silver quality
tonsil	UBERON:0002372	55.33	silver quality
lung	UBERON:0002048	53.40	gold quality
prefrontal cortex	UBERON:0000451	53.09	gold quality
upper lobe of left lung	UBERON:0008952	51.84	gold quality
myometrium	UBERON:0001296	51.59	silver quality
frontal cortex	UBERON:0001870	51.22	silver quality
placenta	UBERON:0001987	51.18	gold quality
adrenal tissue	UBERON:0018303	50.83	gold quality
monocyte	CL:0000576	50.63	silver quality
gall bladder	UBERON:0002110	49.30	gold quality
primary visual cortex	UBERON:0002436	48.81	gold quality
blood	UBERON:0000178	48.04	gold quality
ovary	UBERON:0000992	47.95	gold quality
kidney	UBERON:0002113	46.97	silver quality
gastrocnemius	UBERON:0001388	46.52	silver quality
stomach	UBERON:0000945	46.48	gold quality
lymph node	UBERON:0000029	46.18	silver quality
zone of skin	UBERON:0000014	45.11	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	45.03	gold quality
cerebellar hemisphere	UBERON:0002245	44.82	silver quality
right frontal lobe	UBERON:0002810	44.67	gold quality
right lung	UBERON:0002167	44.66	gold quality
multicellular organism	UBERON:0000468	44.49	gold quality
nucleus accumbens	UBERON:0001882	44.26	silver quality
putamen	UBERON:0001874	44.21	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.26

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.