LINC01111

Summary

LINC01111 (long intergenic non-protein coding RNA 1111, HGNC:49237) is a long non-coding RNA gene on chromosome 8q21.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49237
Approved symbol	LINC01111
Name	long intergenic non-protein coding RNA 1111
Location	8q21.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254300
Ensembl biotype	lncRNA
Entrez	101926978
RNAcentral	URS000061239D — lncRNA, 1663 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000518732

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000518732 — 6 exons

Exon	Start	End
ENSE00002093183	76523195	76524356
ENSE00002095552	76510391	76510484
ENSE00002113127	76475946	76476044
ENSE00002119339	76518800	76518874
ENSE00002133956	76406654	76406775
ENSE00002139061	76433641	76433751

Expression profiles

Bgee: expression breadth broad, 40 present calls, max score 88.42.

FANTOM5 (CAGE): breadth broad, TPM avg 1.1873 / max 335.8124, expressed in 229 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
89435	0.9025	206
89434	0.2003	95
89436	0.0845	22

Top tissues by expression

164 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	88.42	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.09	gold quality
ventricular zone	UBERON:0003053	66.95	gold quality
cortical plate	UBERON:0005343	61.20	gold quality
ganglionic eminence	UBERON:0004023	60.09	gold quality
metanephros cortex	UBERON:0010533	56.43	gold quality
epithelium of nasopharynx	UBERON:0001951	55.61	gold quality
skin of hip	UBERON:0001554	55.36	silver quality
pigmented layer of retina	UBERON:0001782	54.97	silver quality
endothelial cell	CL:0000115	54.03	gold quality
testis	UBERON:0000473	51.66	gold quality
islet of Langerhans	UBERON:0000006	51.52	silver quality
upper leg skin	UBERON:0004262	51.41	silver quality
metanephros	UBERON:0000081	50.12	gold quality
anterior cingulate cortex	UBERON:0009835	49.30	gold quality
cortex of kidney	UBERON:0001225	48.68	gold quality
muscle of leg	UBERON:0001383	47.86	silver quality
adult mammalian kidney	UBERON:0000082	47.51	gold quality
prefrontal cortex	UBERON:0000451	47.43	silver quality
deltoid	UBERON:0001476	45.61	gold quality
gastrocnemius	UBERON:0001388	45.19	silver quality
kidney	UBERON:0002113	45.17	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	44.94	silver quality
ovary	UBERON:0000992	44.74	silver quality
left coronary artery	UBERON:0001626	44.35	silver quality
cartilage tissue	UBERON:0002418	43.57	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
uterine cervix	UBERON:0000002	42.96	gold quality
neocortex	UBERON:0001950	42.94	gold quality
secondary oocyte	CL:0000655	42.57	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.