LINC01115

Summary

LINC01115 (long intergenic non-protein coding RNA 1115, HGNC:49258) is a long non-coding RNA gene on chromosome 2p25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49258
Approved symbol	LINC01115
Name	long intergenic non-protein coding RNA 1115
Location	2p25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237667
Ensembl biotype	lncRNA
Entrez	339822
RNAcentral	URS000075E881 — lncRNA, 1519 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 19 — 19 lncRNA

ENST00000415700, ENST00000621134, ENST00000648115, ENST00000655805, ENST00000655894, ENST00000659656, ENST00000662432, ENST00000663151, ENST00000670082, ENST00000671221, ENST00000783116, ENST00000783117, ENST00000783118, ENST00000783119, ENST00000783120, ENST00000783121, ENST00000783122, ENST00000783123, ENST00000783124

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415700 — 3 exons

Exon	Start	End
ENSE00001684242	806029	806249
ENSE00003740800	779840	780591
ENSE00004156881	868118	868269

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 77.80.

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.80	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	76.42	gold quality
gastrocnemius	UBERON:0001388	73.40	gold quality
muscle of leg	UBERON:0001383	72.45	gold quality
tibial artery	UBERON:0007610	70.73	gold quality
popliteal artery	UBERON:0002250	70.69	gold quality
skeletal muscle tissue	UBERON:0001134	68.96	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.07	gold quality
superior frontal gyrus	UBERON:0002661	65.84	gold quality
right coronary artery	UBERON:0001625	65.66	gold quality
cortical plate	UBERON:0005343	65.63	gold quality
left adrenal gland cortex	UBERON:0035825	64.41	gold quality
ascending aorta	UBERON:0001496	63.80	gold quality
thoracic aorta	UBERON:0001515	63.57	gold quality
descending thoracic aorta	UBERON:0002345	62.98	gold quality
prefrontal cortex	UBERON:0000451	62.47	gold quality
adenohypophysis	UBERON:0002196	61.72	gold quality
primary visual cortex	UBERON:0002436	60.31	gold quality
frontal cortex	UBERON:0001870	60.27	gold quality
mucosa of stomach	UBERON:0001199	59.79	gold quality
ventricular zone	UBERON:0003053	59.45	gold quality
adrenal gland	UBERON:0002369	59.33	gold quality
ganglionic eminence	UBERON:0004023	59.18	gold quality
left adrenal gland	UBERON:0001234	59.08	gold quality
left coronary artery	UBERON:0001626	58.86	gold quality
pituitary gland	UBERON:0000007	58.58	gold quality
islet of Langerhans	UBERON:0000006	58.09	gold quality
ovary	UBERON:0000992	57.86	gold quality
left ovary	UBERON:0002119	57.86	gold quality
cerebral cortex	UBERON:0000956	57.00	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.47

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Chromatin profiling of cortical neurons identifies individual epigenetic signatures in schizophrenia. (PMID:31624234)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.