LINC01120

Summary

LINC01120 (long intergenic non-protein coding RNA 1120, HGNC:49265) is a long non-coding RNA gene on chromosome 2q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49265
Approved symbol	LINC01120
Name	long intergenic non-protein coding RNA 1120
Location	2q21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223631
Ensembl biotype	lncRNA
Entrez	389043
RNAcentral	URS000075DCEE — lncRNA, 3063 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000437751, ENST00000653180, ENST00000661362, ENST00000662267, ENST00000663072, ENST00000664380, ENST00000666196, ENST00000668661, ENST00000669881, ENST00000670748, ENST00000671078, ENST00000671275, ENST00000846053, ENST00000846054, ENST00000846055, ENST00000846056

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000437751 — 4 exons

Exon	Start	End
ENSE00001748437	131407463	131407532
ENSE00001792133	131407845	131409057
ENSE00001799169	131405213	131405447
ENSE00003859308	131402778	131403251

Expression profiles

Bgee: expression breadth broad, 68 present calls, max score 88.58.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1523 / max 168.2547, expressed in 7 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
22546	0.1428	6
22547	0.0095	4

Top tissues by expression

189 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	88.58	gold quality
right testis	UBERON:0004534	88.22	gold quality
testis	UBERON:0000473	86.26	gold quality
adult organism	UBERON:0007023	83.48	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.13	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	63.90	gold quality
sperm	CL:0000019	61.94	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.49	gold quality
ventricular zone	UBERON:0003053	59.05	silver quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
monocyte	CL:0000576	54.19	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
epithelial cell of pancreas	CL:0000083	53.59	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
skin of hip	UBERON:0001554	52.80	silver quality
calcaneal tendon	UBERON:0003701	51.43	silver quality
islet of Langerhans	UBERON:0000006	51.31	silver quality
pancreatic ductal cell	CL:0002079	51.24	silver quality
myocardium	UBERON:0002349	50.25	gold quality
right ovary	UBERON:0002118	50.23	gold quality
tibialis anterior	UBERON:0001385	50.01	silver quality
gall bladder	UBERON:0002110	49.92	gold quality
upper leg skin	UBERON:0004262	49.62	silver quality
tibial nerve	UBERON:0001323	48.88	gold quality
left ovary	UBERON:0002119	48.80	gold quality
adrenal tissue	UBERON:0018303	48.75	silver quality
nasal cavity epithelium	UBERON:0005384	48.22	gold quality
deltoid	UBERON:0001476	48.12	gold quality
adult mammalian kidney	UBERON:0000082	47.66	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.64

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.