LINC01142

Summary

LINC01142 (long intergenic non-protein coding RNA 1142, HGNC:49456) is a long non-coding RNA gene on chromosome 1q24.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49456
Approved symbol	LINC01142
Name	long intergenic non-protein coding RNA 1142
Location	1q24.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224286
Ensembl biotype	lncRNA
Entrez	284688
RNAcentral	URS000075A610 — lncRNA, 1731 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000440404, ENST00000451439, ENST00000831956, ENST00000831957

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000440404 — 4 exons

Exon	Start	End
ENSE00001632790	170273533	170274507
ENSE00001711237	170271395	170271981
ENSE00001801890	170278830	170278932
ENSE00003871857	170284139	170284277

Expression profiles

Bgee: expression breadth broad, 69 present calls, max score 90.17.

Top tissues by expression

183 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.17	gold quality
sperm	CL:0000019	80.05	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	65.25	gold quality
monocyte	CL:0000576	62.70	gold quality
adult mammalian kidney	UBERON:0000082	61.85	gold quality
pericardium	UBERON:0002407	59.93	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.86	gold quality
secondary oocyte	CL:0000655	59.54	gold quality
superficial temporal artery	UBERON:0001614	59.42	gold quality
ventricular zone	UBERON:0003053	58.13	silver quality
endothelial cell	CL:0000115	57.50	gold quality
esophagus squamous epithelium	UBERON:0006920	56.47	gold quality
gingival epithelium	UBERON:0001949	56.28	gold quality
skin of hip	UBERON:0001554	55.94	silver quality
cerebellar hemisphere	UBERON:0002245	55.25	gold quality
cardia of stomach	UBERON:0001162	55.12	gold quality
saphenous vein	UBERON:0007318	54.92	gold quality
cortex of kidney	UBERON:0001225	54.78	gold quality
ventral tegmental area	UBERON:0002691	54.36	gold quality
nasal cavity epithelium	UBERON:0005384	54.34	gold quality
cerebellar vermis	UBERON:0004720	54.23	gold quality
left testis	UBERON:0004533	54.14	gold quality
trigeminal ganglion	UBERON:0001675	54.00	gold quality
corpus callosum	UBERON:0002336	53.94	gold quality
cartilage tissue	UBERON:0002418	53.66	gold quality
testis	UBERON:0000473	53.61	gold quality
superior surface of tongue	UBERON:0007371	53.47	gold quality
pharyngeal mucosa	UBERON:0000355	53.26	gold quality
dorsal root ganglion	UBERON:0000044	53.17	gold quality
inferior vagus X ganglion	UBERON:0005363	53.14	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.27

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.