LINC01162

Summary

LINC01162 (long intergenic non-protein coding RNA 1162, HGNC:49528) is a long non-coding RNA gene on chromosome 7p15.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49528
Approved symbol	LINC01162
Name	long intergenic non-protein coding RNA 1162
Location	7p15.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	uc.206
Ensembl gene	ENSG00000232790
Ensembl biotype	lncRNA
Entrez	104355138
RNAcentral	URS00004762AB — lncRNA, 447 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000447262, ENST00000661032, ENST00000742942, ENST00000742943, ENST00000742944, ENST00000742945, ENST00000742946

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000447262 — 6 exons

Exon	Start	End
ENSE00001591812	20835431	20835504
ENSE00001670192	21021859	21021907
ENSE00001704108	21022057	21022150
ENSE00001732290	21020868	21021003
ENSE00001742900	20882740	20882816
ENSE00003384227	21023132	21023148

Expression profiles

Bgee: expression breadth broad, 21 present calls, max score 83.92.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2385 / max 32.9010, expressed in 95 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
77537	0.2385	95

Top tissues by expression

21 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.92	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.23	gold quality
blood	UBERON:0000178	59.28	gold quality
lower esophagus muscularis layer	UBERON:0035833	57.07	gold quality
monocyte	CL:0000576	55.86	gold quality
transverse colon	UBERON:0001157	52.96	gold quality
lung	UBERON:0002048	50.88	gold quality
placenta	UBERON:0001987	48.58	gold quality
heart left ventricle	UBERON:0002084	47.93	gold quality
skin of leg	UBERON:0001511	43.92	silver quality
prostate gland	UBERON:0002367	43.72	gold quality
substantia nigra	UBERON:0002038	43.40	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	42.57	gold quality
vagina	UBERON:0000996	41.15	silver quality
right frontal lobe	UBERON:0002810	40.62	gold quality
upper lobe of left lung	UBERON:0008952	39.66	silver quality
pituitary gland	UBERON:0000007	36.24	silver quality
tibial nerve	UBERON:0001323	34.80	silver quality
testis	UBERON:0000473	33.13	silver quality
right testis	UBERON:0004534	32.62	silver quality
left testis	UBERON:0004533	32.25	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.29

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.