LINC01163

Summary

LINC01163 (long intergenic non-protein coding RNA 1163, HGNC:49530) is a long non-coding RNA gene on chromosome 10q26.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49530
Approved symbol	LINC01163
Name	long intergenic non-protein coding RNA 1163
Location	10q26.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00017722
Ensembl gene	ENSG00000280953
Ensembl biotype	lncRNA
Entrez	101927381
RNAcentral	URS0000812053 — lncRNA, 3086 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000626518, ENST00000630252, ENST00000747640, ENST00000839826

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000626518 — 4 exons

Exon	Start	End
ENSE00003760878	128181032	128181156
ENSE00003762091	128306041	128306183
ENSE00003771819	128285952	128286025
ENSE00003774475	128287323	128287513

Expression profiles

Bgee: expression breadth broad, 67 present calls, max score 85.70.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2520 / max 24.1494, expressed in 65 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
107670	0.1068	47
107671	0.0973	40
107672	0.0479	23

Top tissues by expression

67 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.70	gold quality
pancreas	UBERON:0001264	79.81	gold quality
granulocyte	CL:0000094	68.74	gold quality
ganglionic eminence	UBERON:0004023	59.20	gold quality
cortex of kidney	UBERON:0001225	58.23	gold quality
monocyte	CL:0000576	57.91	gold quality
blood	UBERON:0000178	56.49	gold quality
smooth muscle tissue	UBERON:0001135	55.74	gold quality
bone marrow	UBERON:0002371	55.63	gold quality
lymph node	UBERON:0000029	54.94	gold quality
endocervix	UBERON:0000458	52.79	gold quality
vermiform appendix	UBERON:0001154	50.93	gold quality
endometrium	UBERON:0001295	50.93	gold quality
body of uterus	UBERON:0009853	48.22	gold quality
prefrontal cortex	UBERON:0000451	48.00	silver quality
multicellular organism	UBERON:0000468	47.77	gold quality
myometrium	UBERON:0001296	46.47	gold quality
tonsil	UBERON:0002372	46.28	gold quality
heart left ventricle	UBERON:0002084	46.03	gold quality
urinary bladder	UBERON:0001255	45.73	silver quality
gall bladder	UBERON:0002110	44.99	silver quality
heart	UBERON:0000948	44.96	silver quality
left lobe of thyroid gland	UBERON:0001120	44.75	gold quality
lung	UBERON:0002048	44.62	gold quality
amygdala	UBERON:0001876	44.33	gold quality
liver	UBERON:0002107	44.31	silver quality
ascending aorta	UBERON:0001496	44.28	gold quality
thyroid gland	UBERON:0002046	44.26	gold quality
spleen	UBERON:0002106	43.81	silver quality
anterior cingulate cortex	UBERON:0009835	43.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.77

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.