LINC01164

Summary

LINC01164 (long intergenic non-protein coding RNA 1164, HGNC:49533) is a long non-coding RNA gene on chromosome 10q26.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49533
Approved symbol	LINC01164
Name	long intergenic non-protein coding RNA 1164
Location	10q26.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000189275
Ensembl biotype	lncRNA
Entrez	399827
RNAcentral	URS000075F049 — lncRNA, 3384 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 19 — 19 lncRNA

ENST00000341866, ENST00000655798, ENST00000667493, ENST00000684956, ENST00000688354, ENST00000700902, ENST00000751157, ENST00000751158, ENST00000751159, ENST00000751160, ENST00000751161, ENST00000751162, ENST00000751163, ENST00000751164, ENST00000751165, ENST00000751166, ENST00000751167, ENST00000751168, ENST00000751169

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000341866 — 5 exons

Exon	Start	End
ENSE00001366054	131773857	131774205
ENSE00001369641	131774884	131776295
ENSE00001373457	131772398	131773687
ENSE00001376423	131789657	131789866
ENSE00001804060	131790077	131790199

Expression profiles

Bgee: expression breadth broad, 39 present calls, max score 91.65.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1701 / max 213.3819, expressed in 29 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
112055	0.1701	29

Top tissues by expression

39 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
pancreas	UBERON:0001264	91.65	gold quality
colon	UBERON:0001155	87.41	gold quality
right hemisphere of cerebellum	UBERON:0014890	74.50	gold quality
cerebellar hemisphere	UBERON:0002245	72.18	gold quality
tonsil	UBERON:0002372	71.76	gold quality
right frontal lobe	UBERON:0002810	69.61	gold quality
superior frontal gyrus	UBERON:0002661	69.17	gold quality
frontal cortex	UBERON:0001870	66.97	gold quality
Brodmann (1909) area 9	UBERON:0013540	66.81	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	66.02	gold quality
prefrontal cortex	UBERON:0000451	65.15	gold quality
cerebral cortex	UBERON:0000956	64.22	gold quality
anterior cingulate cortex	UBERON:0009835	63.50	gold quality
brain	UBERON:0000955	61.36	gold quality
thyroid gland	UBERON:0002046	61.14	silver quality
substantia nigra	UBERON:0002038	55.37	gold quality
multicellular organism	UBERON:0000468	53.59	gold quality
stomach	UBERON:0000945	52.17	silver quality
hypothalamus	UBERON:0001898	51.70	gold quality
primary visual cortex	UBERON:0002436	50.44	silver quality
omental fat pad	UBERON:0010414	49.56	gold quality
blood	UBERON:0000178	49.49	silver quality
Ammon’s horn	UBERON:0001954	49.02	gold quality
caudate nucleus	UBERON:0001873	47.83	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	47.13	gold quality
skin of abdomen	UBERON:0001416	46.90	gold quality
putamen	UBERON:0001874	46.42	gold quality
nucleus accumbens	UBERON:0001882	46.30	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	45.46	silver quality
skin of leg	UBERON:0001511	45.18	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.64

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.