LINC01165

Summary

LINC01165 (long intergenic non-protein coding RNA 1165, HGNC:49534) is a long non-coding RNA gene on chromosome 10q26.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49534
Approved symbol	LINC01165
Name	long intergenic non-protein coding RNA 1165
Location	10q26.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229081
Ensembl biotype	lncRNA
Entrez	100128830
RNAcentral	URS00002965AD — lncRNA, 1623 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000445190

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000445190 — 1 exons

Exon	Start	End
ENSE00001768175	132520827	132522449

Expression profiles

Bgee: expression breadth ubiquitous, 109 present calls, max score 80.16.

Top tissues by expression

210 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.16	silver quality
buccal mucosa cell	CL:0002336	74.28	silver quality
sural nerve	UBERON:0015488	67.31	silver quality
cortical plate	UBERON:0005343	62.18	silver quality
skin of hip	UBERON:0001554	57.90	silver quality
myocardium	UBERON:0002349	56.63	gold quality
ganglionic eminence	UBERON:0004023	56.36	silver quality
gingival epithelium	UBERON:0001949	56.12	gold quality
gingiva	UBERON:0001828	55.91	gold quality
ectocervix	UBERON:0012249	55.22	gold quality
superficial temporal artery	UBERON:0001614	55.13	gold quality
apex of heart	UBERON:0002098	54.67	gold quality
right lobe of liver	UBERON:0001114	54.45	gold quality
stromal cell of endometrium	CL:0002255	54.28	silver quality
esophagus squamous epithelium	UBERON:0006920	53.95	gold quality
tonsil	UBERON:0002372	53.10	gold quality
body of uterus	UBERON:0009853	52.77	gold quality
muscle of leg	UBERON:0001383	51.35	gold quality
nucleus accumbens	UBERON:0001882	51.08	gold quality
seminal vesicle	UBERON:0000998	50.99	gold quality
left uterine tube	UBERON:0001303	50.85	gold quality
nasal cavity epithelium	UBERON:0005384	50.81	gold quality
gastrocnemius	UBERON:0001388	50.65	gold quality
mucosa of stomach	UBERON:0001199	50.57	gold quality
tibial nerve	UBERON:0001323	50.25	gold quality
prefrontal cortex	UBERON:0000451	49.71	silver quality
heart left ventricle	UBERON:0002084	49.37	gold quality
skeletal muscle tissue	UBERON:0001134	49.31	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	49.08	gold quality
cardiac ventricle	UBERON:0002082	48.96	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.16

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.