LINC01166

Summary

LINC01166 (long intergenic non-protein coding RNA 1166, HGNC:49535) is a long non-coding RNA gene on chromosome 10q26.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49535
Approved symbol	LINC01166
Name	long intergenic non-protein coding RNA 1166
Location	10q26.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232903
Ensembl biotype	lncRNA
Entrez	101927590
RNAcentral	URS0002A283B3 — lncRNA, 2762 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 33 — 33 lncRNA

ENST00000423232, ENST00000443633, ENST00000715754, ENST00000715755, ENST00000715756, ENST00000814339, ENST00000814340, ENST00000814341, ENST00000814342, ENST00000814343, ENST00000814344, ENST00000814345, ENST00000814346, ENST00000814347, ENST00000814348, ENST00000814349, ENST00000814350, ENST00000814351, ENST00000814352, ENST00000814353, ENST00000814354, ENST00000814355, ENST00000814356, ENST00000814357, ENST00000814358, ENST00000814359, ENST00000814360, ENST00000814361, ENST00000814362, ENST00000814363, ENST00000814364, ENST00000814365, ENST00000814366

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000423232 — 2 exons

Exon	Start	End
ENSE00004215284	132961759	132962250
ENSE00004215326	132961326	132961464

Expression profiles

Bgee: expression breadth broad, 96 present calls, max score 75.63.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0171 / max 2.2561, expressed in 8 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
112088	0.0171	8

Top tissues by expression

96 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.63	gold quality
hypothalamus	UBERON:0001898	68.12	gold quality
primary visual cortex	UBERON:0002436	64.49	gold quality
lower esophagus mucosa	UBERON:0035834	64.20	gold quality
prefrontal cortex	UBERON:0000451	63.79	gold quality
superior frontal gyrus	UBERON:0002661	63.03	gold quality
frontal cortex	UBERON:0001870	62.68	gold quality
right frontal lobe	UBERON:0002810	61.30	gold quality
cerebral cortex	UBERON:0000956	59.56	gold quality
anterior cingulate cortex	UBERON:0009835	59.48	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	59.30	gold quality
substantia nigra	UBERON:0002038	57.91	gold quality
Brodmann (1909) area 9	UBERON:0013540	57.79	gold quality
cortical plate	UBERON:0005343	57.73	silver quality
brain	UBERON:0000955	56.16	gold quality
nucleus accumbens	UBERON:0001882	54.46	gold quality
heart left ventricle	UBERON:0002084	53.89	gold quality
putamen	UBERON:0001874	53.43	gold quality
caudate nucleus	UBERON:0001873	53.12	gold quality
left testis	UBERON:0004533	52.11	gold quality
heart	UBERON:0000948	51.89	gold quality
temporal lobe	UBERON:0001871	51.78	gold quality
testis	UBERON:0000473	51.55	gold quality
amygdala	UBERON:0001876	51.49	gold quality
cortex of kidney	UBERON:0001225	51.30	gold quality
right hemisphere of cerebellum	UBERON:0014890	50.93	gold quality
cerebellar cortex	UBERON:0002129	50.74	gold quality
cerebellum	UBERON:0002037	50.73	gold quality
right testis	UBERON:0004534	50.66	gold quality
cerebellar hemisphere	UBERON:0002245	50.60	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.