LINC01169

Summary

LINC01169 (long intergenic non-protein coding RNA 1169, HGNC:49541) is a long non-coding RNA gene on chromosome 15q22.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49541
Approved symbol	LINC01169
Name	long intergenic non-protein coding RNA 1169
Location	15q22.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259471
Ensembl biotype	lncRNA
Entrez	102723165
RNAcentral	URS000075A048 — lncRNA, 837 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000558797, ENST00000839031, ENST00000839032, ENST00000839033, ENST00000839034, ENST00000839035

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000558797 — 5 exons

Exon	Start	End
ENSE00002028841	66668341	66668454
ENSE00002081909	66664362	66664452
ENSE00002546786	66683999	66684042
ENSE00002549479	66685270	66685794
ENSE00002568893	66582190	66582248

Expression profiles

Bgee: expression breadth broad, 80 present calls, max score 72.30.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.6676 / max 60.0778, expressed in 112 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
147276	0.6676	112

Top tissues by expression

181 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lung	UBERON:0002167	72.30	gold quality
buccal mucosa cell	CL:0002336	67.67	gold quality
vena cava	UBERON:0004087	57.74	gold quality
upper lobe of left lung	UBERON:0008952	54.92	gold quality
upper lobe of lung	UBERON:0008948	54.25	gold quality
islet of Langerhans	UBERON:0000006	53.78	gold quality
vermiform appendix	UBERON:0001154	53.55	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	52.73	gold quality
gall bladder	UBERON:0002110	52.42	gold quality
lung	UBERON:0002048	51.79	gold quality
right lobe of liver	UBERON:0001114	51.75	gold quality
monocyte	CL:0000576	50.65	silver quality
right atrium auricular region	UBERON:0006631	49.59	gold quality
cardiac atrium	UBERON:0002081	49.29	gold quality
left coronary artery	UBERON:0001626	48.32	gold quality
lymph node	UBERON:0000029	47.98	silver quality
liver	UBERON:0002107	47.87	gold quality
right ovary	UBERON:0002118	47.54	gold quality
coronary artery	UBERON:0001621	47.20	gold quality
heart	UBERON:0000948	46.99	gold quality
hindlimb stylopod muscle	UBERON:0004252	46.58	silver quality
cortex of kidney	UBERON:0001225	46.36	gold quality
muscle of leg	UBERON:0001383	45.56	gold quality
right coronary artery	UBERON:0001625	45.50	gold quality
body of stomach	UBERON:0001161	45.24	gold quality
blood	UBERON:0000178	45.11	gold quality
gastrocnemius	UBERON:0001388	45.09	gold quality
stomach	UBERON:0000945	44.99	gold quality
heart left ventricle	UBERON:0002084	44.96	gold quality
prefrontal cortex	UBERON:0000451	44.80	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.51

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.