LINC01177

Summary

LINC01177 (long intergenic non-protein coding RNA 1177, HGNC:49549) is a long non-coding RNA gene on chromosome 16p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49549
Approved symbol	LINC01177
Name	long intergenic non-protein coding RNA 1177
Location	16p13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261397
Ensembl biotype	lncRNA
Entrez	104355218
RNAcentral	URS00004173D6 — lncRNA, 536 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000568030

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000568030 — 4 exons

Exon	Start	End
ENSE00002589606	9443985	9444152
ENSE00002590311	9444933	9444985
ENSE00002607595	9442504	9442594
ENSE00002608392	9441294	9441517

Expression profiles

Bgee: expression breadth broad, 36 present calls, max score 54.71.

Top tissues by expression

36 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
blood	UBERON:0000178	54.71	gold quality
cerebellum	UBERON:0002037	54.56	silver quality
prefrontal cortex	UBERON:0000451	54.11	gold quality
monocyte	CL:0000576	51.08	silver quality
endometrium	UBERON:0001295	49.42	gold quality
corpus callosum	UBERON:0002336	49.04	silver quality
Brodmann (1909) area 9	UBERON:0013540	48.71	gold quality
ascending aorta	UBERON:0001496	47.22	gold quality
kidney	UBERON:0002113	47.02	silver quality
saliva-secreting gland	UBERON:0001044	45.76	gold quality
anterior cingulate cortex	UBERON:0009835	44.37	silver quality
thyroid gland	UBERON:0002046	43.84	gold quality
gastrocnemius	UBERON:0001388	43.37	silver quality
left lobe of thyroid gland	UBERON:0001120	43.21	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	43.14	silver quality
colon	UBERON:0001155	43.13	silver quality
frontal cortex	UBERON:0001870	42.25	gold quality
cerebral cortex	UBERON:0000956	42.04	gold quality
substantia nigra	UBERON:0002038	41.98	gold quality
heart left ventricle	UBERON:0002084	41.84	silver quality
small intestine Peyer’s patch	UBERON:0003454	41.76	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	41.00	silver quality
multicellular organism	UBERON:0000468	40.87	gold quality
putamen	UBERON:0001874	40.79	silver quality
right testis	UBERON:0004534	40.54	gold quality
tibial artery	UBERON:0007610	40.37	silver quality
testis	UBERON:0000473	39.73	gold quality
left testis	UBERON:0004533	39.68	gold quality
tibial nerve	UBERON:0001323	39.52	silver quality
amygdala	UBERON:0001876	38.26	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.