LINC01180

Summary

LINC01180 (long intergenic non-protein coding RNA 1180, HGNC:49558) is a long non-coding RNA gene on chromosome 17q21.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49558
Approved symbol	LINC01180
Name	long intergenic non-protein coding RNA 1180
Location	17q21.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000266979
Ensembl biotype	lncRNA
Entrez	101927017
RNAcentral	URS000075D35D — lncRNA, 2039 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000589259, ENST00000731355

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000589259 — 3 exons

Exon	Start	End
ENSE00002792587	44647285	44647386
ENSE00002926641	44646364	44646704
ENSE00002957311	44648768	44650349

Expression profiles

Bgee: expression breadth broad, 36 present calls, max score 94.67.

Top tissues by expression

156 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	94.67	silver quality
ganglionic eminence	UBERON:0004023	59.61	silver quality
ventricular zone	UBERON:0003053	57.92	silver quality
secondary oocyte	CL:0000655	57.46	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.96	silver quality
cortical plate	UBERON:0005343	56.67	silver quality
left testis	UBERON:0004533	56.25	gold quality
right testis	UBERON:0004534	55.80	gold quality
testis	UBERON:0000473	55.53	gold quality
caecum	UBERON:0001153	55.19	gold quality
adult organism	UBERON:0007023	55.02	silver quality
sperm	CL:0000019	54.65	gold quality
ovary	UBERON:0000992	54.50	gold quality
vena cava	UBERON:0004087	54.46	gold quality
inferior vagus X ganglion	UBERON:0005363	53.47	gold quality
trigeminal ganglion	UBERON:0001675	53.44	gold quality
adrenal cortex	UBERON:0001235	53.31	gold quality
cardia of stomach	UBERON:0001162	53.22	gold quality
ventral tegmental area	UBERON:0002691	53.18	gold quality
uterine cervix	UBERON:0000002	52.76	gold quality
saphenous vein	UBERON:0007318	52.48	gold quality
superior vestibular nucleus	UBERON:0007227	52.46	gold quality
layer of synovial tissue	UBERON:0007616	52.46	gold quality
cardiac atrium	UBERON:0002081	52.42	gold quality
pericardium	UBERON:0002407	52.37	gold quality
lymph node	UBERON:0000029	52.34	gold quality
fundus of stomach	UBERON:0001160	52.33	gold quality
urethra	UBERON:0000057	52.29	gold quality
dorsal root ganglion	UBERON:0000044	52.27	gold quality
thymus	UBERON:0002370	52.21	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.58

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.