LINC01182

Summary

LINC01182 (long intergenic non-protein coding RNA 1182, HGNC:49564) is a long non-coding RNA gene on chromosome 4p15.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49564
Approved symbol	LINC01182
Name	long intergenic non-protein coding RNA 1182
Location	4p15.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250634
Ensembl biotype	lncRNA
Entrez	101929071
RNAcentral	URS0000590507 — lncRNA, 2228 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 37 — 37 lncRNA

ENST00000503532, ENST00000510907, ENST00000657663, ENST00000658596, ENST00000669061, ENST00000715489, ENST00000715490, ENST00000715491, ENST00000715492, ENST00000715493, ENST00000715494, ENST00000715495, ENST00000715506, ENST00000715507, ENST00000715508, ENST00000715509, ENST00000715510, ENST00000715511, ENST00000715512, ENST00000727466, ENST00000727467, ENST00000727468, ENST00000727469, ENST00000727470, ENST00000727471, ENST00000727472, ENST00000727473, ENST00000727474, ENST00000727475, ENST00000727476, ENST00000727477, ENST00000727478, ENST00000727479, ENST00000727480, ENST00000816953, ENST00000816954, ENST00000816955

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503532 — 5 exons

Exon	Start	End
ENSE00002039323	13829780	13829847
ENSE00002046378	13975661	13975888
ENSE00002046591	13959989	13960086
ENSE00002063395	13977050	13977075
ENSE00002073274	13820110	13820271

Expression profiles

Bgee: expression breadth broad, 100 present calls, max score 75.38.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1332 / max 14.3536, expressed in 66 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
46945	0.1332	66

Top tissues by expression

100 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.38	silver quality
skeletal muscle tissue	UBERON:0001134	70.04	silver quality
superior frontal gyrus	UBERON:0002661	66.07	gold quality
nucleus accumbens	UBERON:0001882	64.68	gold quality
putamen	UBERON:0001874	64.27	gold quality
stromal cell of endometrium	CL:0002255	63.69	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	63.62	silver quality
caudate nucleus	UBERON:0001873	63.13	gold quality
cortical plate	UBERON:0005343	62.83	gold quality
prefrontal cortex	UBERON:0000451	62.40	gold quality
Brodmann (1909) area 9	UBERON:0013540	61.78	gold quality
frontal cortex	UBERON:0001870	61.12	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	60.47	gold quality
cerebral cortex	UBERON:0000956	59.38	gold quality
anterior cingulate cortex	UBERON:0009835	58.94	gold quality
monocyte	CL:0000576	58.51	gold quality
right frontal lobe	UBERON:0002810	58.15	gold quality
brain	UBERON:0000955	57.83	gold quality
ganglionic eminence	UBERON:0004023	57.79	gold quality
endometrium	UBERON:0001295	54.63	gold quality
testis	UBERON:0000473	54.33	gold quality
primary visual cortex	UBERON:0002436	53.90	gold quality
right testis	UBERON:0004534	53.56	gold quality
adult mammalian kidney	UBERON:0000082	53.52	gold quality
right atrium auricular region	UBERON:0006631	53.37	gold quality
Ammon’s horn	UBERON:0001954	53.36	gold quality
left testis	UBERON:0004533	53.25	gold quality
duodenum	UBERON:0002114	52.84	gold quality
multicellular organism	UBERON:0000468	52.79	gold quality
heart	UBERON:0000948	52.45	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.09

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.