LINC01193

Summary

LINC01193 (long intergenic non-protein coding RNA 1193, HGNC:28003) is a long non-coding RNA gene on chromosome 15q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:28003
Approved symbol	LINC01193
Name	long intergenic non-protein coding RNA 1193
Location	15q11.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	LOC348120
Ensembl gene	ENSG00000258710
Ensembl biotype	lncRNA
Entrez	348120
RNAcentral	URS000075C702 — lncRNA, 3417 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 68 — 68 lncRNA

ENST00000553416, ENST00000554209, ENST00000554817, ENST00000557312, ENST00000567916, ENST00000653373, ENST00000653412, ENST00000653450, ENST00000653673, ENST00000654471, ENST00000654677, ENST00000655788, ENST00000657529, ENST00000658496, ENST00000659492, ENST00000659808, ENST00000660153, ENST00000660895, ENST00000661454, ENST00000661835, ENST00000662062, ENST00000663152, ENST00000663648, ENST00000664036, ENST00000665454, ENST00000665633, ENST00000665683, ENST00000666174, ENST00000666366, ENST00000668088, ENST00000668544, ENST00000669291, ENST00000670123, ENST00000670237, ENST00000670349, ENST00000775522, ENST00000775523, ENST00000775524, ENST00000775525, ENST00000775526, ENST00000775527, ENST00000775528, ENST00000775529, ENST00000775530, ENST00000775531, ENST00000775532, ENST00000775533, ENST00000775534, ENST00000775535, ENST00000775536, ENST00000775537, ENST00000775538, ENST00000775539, ENST00000775540, ENST00000775541, ENST00000775542, ENST00000775543, ENST00000775544, ENST00000775545, ENST00000775546, ENST00000775547, ENST00000775548, ENST00000775549, ENST00000775550, ENST00000775551, ENST00000775552, ENST00000775553, ENST00000775554

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000553416 — 5 exons

Exon	Start	End
ENSE00002440680	20940438	20940766
ENSE00002490378	20942375	20942560
ENSE00002490664	20990620	20993303
ENSE00002519336	20972106	20972149
ENSE00002589025	20981823	20981980

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 89.28.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0930 / max 51.6260, expressed in 13 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
145434	0.0930	13

Top tissues by expression

228 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.28	gold quality
left testis	UBERON:0004533	85.40	gold quality
right testis	UBERON:0004534	83.90	gold quality
testis	UBERON:0000473	82.59	gold quality
sperm	CL:0000019	80.53	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.28	gold quality
tibialis anterior	UBERON:0001385	72.85	silver quality
sural nerve	UBERON:0015488	72.09	gold quality
ileal mucosa	UBERON:0000331	70.87	silver quality
pancreatic ductal cell	CL:0002079	69.55	silver quality
ventricular zone	UBERON:0003053	67.85	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.28	gold quality
cortical plate	UBERON:0005343	65.25	gold quality
deltoid	UBERON:0001476	58.79	gold quality
adult organism	UBERON:0007023	58.39	silver quality
epithelial cell of pancreas	CL:0000083	55.81	gold quality
apex of heart	UBERON:0002098	55.69	gold quality
monocyte	CL:0000576	55.34	gold quality
metanephros cortex	UBERON:0010533	54.74	gold quality
endothelial cell	CL:0000115	54.39	gold quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
islet of Langerhans	UBERON:0000006	54.25	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
stromal cell of endometrium	CL:0002255	54.21	silver quality
upper leg skin	UBERON:0004262	54.11	silver quality
kidney epithelium	UBERON:0004819	53.93	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.65	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
muscle of leg	UBERON:0001383	53.34	gold quality
prefrontal cortex	UBERON:0000451	52.52	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.63

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Association between the CTLA4 +49A/G (rs231775) and CT60 (rs3087243) gene variants with vitiligo: study on a Mexican population. (PMID:36163113)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.