LINC01202

Summary

LINC01202 (long intergenic non-protein coding RNA 1202, HGNC:49633) is a long non-coding RNA gene on chromosome 5q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49633
Approved symbol	LINC01202
Name	long intergenic non-protein coding RNA 1202
Location	5q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000280776
Ensembl biotype	lncRNA
Entrez	104326188
RNAcentral	URS00007E3DAE — lncRNA, 697 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000625268, ENST00000812067, ENST00000812068, ENST00000812069, ENST00000812070

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000625268 — 3 exons

Exon	Start	End
ENSE00003768779	162001120	162001536
ENSE00003770387	161907111	161910833
ENSE00003775095	161923617	161923864

Expression profiles

Bgee: expression breadth broad, 27 present calls, max score 67.91.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1553 / max 28.7072, expressed in 42 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
64682	0.1553	42

Top tissues by expression

27 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
prefrontal cortex	UBERON:0000451	67.91	gold quality
superior frontal gyrus	UBERON:0002661	66.10	gold quality
Brodmann (1909) area 9	UBERON:0013540	65.60	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	65.53	gold quality
caudate nucleus	UBERON:0001873	65.31	gold quality
frontal cortex	UBERON:0001870	64.89	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	62.96	gold quality
cerebral cortex	UBERON:0000956	62.61	gold quality
right frontal lobe	UBERON:0002810	60.90	gold quality
anterior cingulate cortex	UBERON:0009835	60.29	gold quality
brain	UBERON:0000955	58.21	gold quality
primary visual cortex	UBERON:0002436	56.21	gold quality
Ammon’s horn	UBERON:0001954	50.04	gold quality
cerebellar cortex	UBERON:0002129	47.96	gold quality
cerebellar hemisphere	UBERON:0002245	47.93	gold quality
temporal lobe	UBERON:0001871	47.43	gold quality
amygdala	UBERON:0001876	47.26	gold quality
right hemisphere of cerebellum	UBERON:0014890	46.73	gold quality
placenta	UBERON:0001987	45.59	silver quality
substantia nigra	UBERON:0002038	44.38	gold quality
putamen	UBERON:0001874	43.07	gold quality
hypothalamus	UBERON:0001898	42.35	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	42.33	gold quality
body of stomach	UBERON:0001161	41.92	silver quality
blood	UBERON:0000178	39.88	silver quality
lower esophagus muscularis layer	UBERON:0035833	39.74	silver quality
nucleus accumbens	UBERON:0001882	38.57	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.