LINC01203

Summary

LINC01203 (long intergenic non-protein coding RNA 1203, HGNC:49634) is a long non-coding RNA gene on chromosome Xp22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49634
Approved symbol	LINC01203
Name	long intergenic non-protein coding RNA 1203
Location	Xp22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226985
Ensembl biotype	lncRNA
Entrez	100133123
RNAcentral	URS00002CB32E — lncRNA, 580 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 32 — 32 lncRNA

ENST00000419566, ENST00000420403, ENST00000446964, ENST00000456091, ENST00000653729, ENST00000655502, ENST00000656111, ENST00000656271, ENST00000656410, ENST00000656979, ENST00000659191, ENST00000659526, ENST00000660305, ENST00000661104, ENST00000661464, ENST00000661545, ENST00000661629, ENST00000665887, ENST00000667532, ENST00000667868, ENST00000668192, ENST00000669963, ENST00000671651, ENST00000726121, ENST00000726122, ENST00000726123, ENST00000726124, ENST00000726125, ENST00000726126, ENST00000726127, ENST00000726128, ENST00000726129

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419566 — 7 exons

Exon	Start	End
ENSE00001592863	13335659	13335697
ENSE00001661451	13335482	13335545
ENSE00001699167	13341731	13341825
ENSE00001726288	13336379	13336460
ENSE00001728035	13339926	13340099
ENSE00001738536	13337895	13337948
ENSE00001749867	13335241	13335312

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 87.51.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1063 / max 15.2070, expressed in 52 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
195567	0.0868	37
195568	0.0195	6

Top tissues by expression

134 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
thymus	UBERON:0002370	87.51	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.29	gold quality
cerebellar vermis	UBERON:0004720	80.74	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.77	gold quality
left testis	UBERON:0004533	78.27	gold quality
right testis	UBERON:0004534	77.95	gold quality
testis	UBERON:0000473	77.47	gold quality
right lobe of liver	UBERON:0001114	73.61	gold quality
quadriceps femoris	UBERON:0001377	71.49	gold quality
liver	UBERON:0002107	70.00	gold quality
duodenum	UBERON:0002114	69.54	gold quality
cortical plate	UBERON:0005343	66.91	gold quality
spinal cord	UBERON:0002240	66.16	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	66.11	gold quality
placenta	UBERON:0001987	65.12	gold quality
rectum	UBERON:0001052	64.94	gold quality
right adrenal gland	UBERON:0001233	63.91	gold quality
apex of heart	UBERON:0002098	63.71	gold quality
right adrenal gland cortex	UBERON:0035827	63.37	gold quality
mucosa of transverse colon	UBERON:0004991	63.18	gold quality
bone marrow	UBERON:0002371	63.05	gold quality
adrenal tissue	UBERON:0018303	62.76	gold quality
left adrenal gland	UBERON:0001234	62.72	gold quality
adrenal gland	UBERON:0002369	62.48	gold quality
left adrenal gland cortex	UBERON:0035825	62.44	gold quality
transverse colon	UBERON:0001157	62.30	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.17	gold quality
body of pancreas	UBERON:0001150	61.58	gold quality
small intestine	UBERON:0002108	61.54	gold quality
small intestine Peyer’s patch	UBERON:0003454	60.69	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.39

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.