LINC01204

Summary

LINC01204 (long intergenic non-protein coding RNA 1204, HGNC:49635) is a long non-coding RNA gene on chromosome Xp11.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49635
Approved symbol	LINC01204
Name	long intergenic non-protein coding RNA 1204
Location	Xp11.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229563
Ensembl biotype	lncRNA
Entrez	101927528
RNAcentral	URS000075B27E — lncRNA, 2924 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000422047, ENST00000435394, ENST00000609127, ENST00000657646, ENST00000657964, ENST00000671478, ENST00000734665, ENST00000748748, ENST00000748749, ENST00000748750

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000422047 — 5 exons

Exon	Start	End
ENSE00001639471	45602297	45602439
ENSE00001643447	45629906	45629983
ENSE00001675021	45630073	45630202
ENSE00001705022	45510484	45510595
ENSE00001709904	45629459	45629634

Expression profiles

Bgee: expression breadth broad, 81 present calls, max score 80.35.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3550 / max 87.4849, expressed in 136 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
196096	0.1549	65
196099	0.1082	24
196097	0.0919	42

Top tissues by expression

182 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.35	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.38	gold quality
sural nerve	UBERON:0015488	64.22	gold quality
buccal mucosa cell	CL:0002336	57.49	gold quality
metanephros	UBERON:0000081	55.31	gold quality
vena cava	UBERON:0004087	54.52	gold quality
stromal cell of endometrium	CL:0002255	54.33	silver quality
monocyte	CL:0000576	52.73	silver quality
germinal epithelium of ovary	UBERON:0001304	52.41	gold quality
mammary duct	UBERON:0001765	51.81	gold quality
substantia nigra pars reticulata	UBERON:0001966	51.67	gold quality
heart left ventricle	UBERON:0002084	51.28	gold quality
islet of Langerhans	UBERON:0000006	51.25	gold quality
calcaneal tendon	UBERON:0003701	50.57	silver quality
cardiac ventricle	UBERON:0002082	50.08	gold quality
oocyte	CL:0000023	49.92	gold quality
smooth muscle tissue	UBERON:0001135	49.72	gold quality
muscle of leg	UBERON:0001383	49.65	gold quality
gastrocnemius	UBERON:0001388	48.89	gold quality
left coronary artery	UBERON:0001626	48.84	gold quality
sperm	CL:0000019	48.58	gold quality
heart	UBERON:0000948	47.66	gold quality
skeletal muscle tissue	UBERON:0001134	47.63	silver quality
pancreas	UBERON:0001264	47.62	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.62	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	47.45	gold quality
coronary artery	UBERON:0001621	47.11	gold quality
body of pancreas	UBERON:0001150	46.68	gold quality
right lobe of liver	UBERON:0001114	46.63	silver quality
caecum	UBERON:0001153	46.52	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.75

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.