LINC01205

Summary

LINC01205 (long intergenic non-protein coding RNA 1205, HGNC:49636) is a long non-coding RNA gene on chromosome 3q13.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49636
Approved symbol	LINC01205
Name	long intergenic non-protein coding RNA 1205
Location	3q13.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228980
Ensembl biotype	lncRNA
Entrez	401082
RNAcentral	URS00001CF2E9 — lncRNA, 1493 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 18 lncRNA

ENST00000489670, ENST00000497996, ENST00000652897, ENST00000658412, ENST00000659474, ENST00000661437, ENST00000663929, ENST00000670331, ENST00000726638, ENST00000726639, ENST00000726640, ENST00000726641, ENST00000726642, ENST00000726643, ENST00000726644, ENST00000726645, ENST00000726646, ENST00000804758

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000489670 — 2 exons

Exon	Start	End
ENSE00001903632	109417733	109419017
ENSE00001930038	109410162	109410207

Expression profiles

Bgee: expression breadth ubiquitous, 109 present calls, max score 85.07.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1346 / max 31.9189, expressed in 38 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
37842	0.0639	29
37845	0.0384	15
37844	0.0180	8
37843	0.0143	8

Top tissues by expression

109 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.07	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.82	gold quality
mucosa of transverse colon	UBERON:0004991	64.75	gold quality
sural nerve	UBERON:0015488	62.92	silver quality
colonic epithelium	UBERON:0000397	62.55	silver quality
ganglionic eminence	UBERON:0004023	61.88	gold quality
ventricular zone	UBERON:0003053	60.70	gold quality
skeletal muscle tissue	UBERON:0001134	58.41	gold quality
liver	UBERON:0002107	57.67	gold quality
placenta	UBERON:0001987	57.54	gold quality
cortical plate	UBERON:0005343	57.49	silver quality
bone marrow	UBERON:0002371	55.48	silver quality
muscle tissue	UBERON:0002385	53.52	silver quality
monocyte	CL:0000576	53.24	gold quality
right lobe of liver	UBERON:0001114	52.99	gold quality
blood	UBERON:0000178	52.18	silver quality
kidney	UBERON:0002113	52.08	gold quality
superior frontal gyrus	UBERON:0002661	52.01	gold quality
adult mammalian kidney	UBERON:0000082	51.57	gold quality
transverse colon	UBERON:0001157	50.59	gold quality
urinary bladder	UBERON:0001255	50.00	gold quality
primary visual cortex	UBERON:0002436	49.88	gold quality
prefrontal cortex	UBERON:0000451	49.44	silver quality
lymph node	UBERON:0000029	49.37	silver quality
colon	UBERON:0001155	48.64	gold quality
right atrium auricular region	UBERON:0006631	48.12	gold quality
duodenum	UBERON:0002114	47.62	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	47.43	gold quality
intestine	UBERON:0000160	47.42	gold quality
descending thoracic aorta	UBERON:0002345	47.13	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-CURD-119	yes	40.16
E-ANND-3	yes	3.27

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.