LINC01206

Summary

LINC01206 (long intergenic non-protein coding RNA 1206, HGNC:49637) is a long non-coding RNA gene on chromosome 3q26.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49637
Approved symbol	LINC01206
Name	long intergenic non-protein coding RNA 1206
Location	3q26.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000242512
Ensembl biotype	lncRNA
Entrez	100996490
RNAcentral	URS000075B21D — lncRNA, 9559 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 114 — 114 lncRNA

ENST00000467313, ENST00000474045, ENST00000476815, ENST00000482787, ENST00000490001, ENST00000596820, ENST00000600750, ENST00000608042, ENST00000608102, ENST00000608336, ENST00000609052, ENST00000609168, ENST00000609852, ENST00000610910, ENST00000614303, ENST00000619662, ENST00000625253, ENST00000625373, ENST00000625703, ENST00000625746, ENST00000625878, ENST00000627619, ENST00000627678, ENST00000627881, ENST00000628320, ENST00000628468, ENST00000628621, ENST00000628718, ENST00000628934, ENST00000629003, ENST00000629026, ENST00000629138, ENST00000630063, ENST00000630341, ENST00000630400, ENST00000630787, ENST00000631282, ENST00000653068, ENST00000653372, ENST00000653513, ENST00000653529, ENST00000654438, ENST00000654624, ENST00000654747, ENST00000654873, ENST00000655047, ENST00000655284, ENST00000655484, ENST00000655739, ENST00000656291, ENST00000656417, ENST00000657406, ENST00000657472, ENST00000657754, ENST00000658068, ENST00000658146, ENST00000658210, ENST00000658359, ENST00000658690, ENST00000658782, ENST00000658854, ENST00000658971, ENST00000659291, ENST00000659979, ENST00000660147, ENST00000660595, ENST00000660719, ENST00000660999, ENST00000661294, ENST00000661651, ENST00000661673, ENST00000662014, ENST00000662045, ENST00000662056, ENST00000662948, ENST00000663203, ENST00000663520, ENST00000663678, ENST00000664878, ENST00000664956, ENST00000665009, ENST00000665199, ENST00000665354, ENST00000666439, ENST00000666595, ENST00000666871, ENST00000667275, ENST00000667486, ENST00000667792, ENST00000668105, ENST00000668631, ENST00000668891, ENST00000669175, ENST00000669382, ENST00000669452, ENST00000669606, ENST00000669780, ENST00000670378, ENST00000670610, ENST00000671631, ENST00000716321, ENST00000764327, ENST00000764328, ENST00000764329, ENST00000764330, ENST00000764331, ENST00000764332, ENST00000764333, ENST00000764334, ENST00000764335, ENST00000764336, ENST00000764337, ENST00000764338, ENST00000764339

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000467313 — 5 exons

Exon	Start	End
ENSE00001820885	181971832	181971906
ENSE00001905033	181972344	181972513
ENSE00001958848	181953527	181953737
ENSE00003705057	181973196	181973857
ENSE00003864718	181952376	181952470

Expression profiles

Bgee: expression breadth ubiquitous, 113 present calls, max score 81.37.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0811 / max 83.9018, expressed in 5 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
40038	0.0460	4
40039	0.0351	4

Top tissues by expression

205 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	81.37	gold quality
left testis	UBERON:0004533	81.30	gold quality
right testis	UBERON:0004534	80.76	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.63	gold quality
testis	UBERON:0000473	80.49	gold quality
sperm	CL:0000019	79.42	gold quality
cardiac muscle of right atrium	UBERON:0003379	76.86	gold quality
left ventricle myocardium	UBERON:0006566	76.79	gold quality
upper arm skin	UBERON:0004263	74.74	gold quality
adult organism	UBERON:0007023	73.71	gold quality
tibialis anterior	UBERON:0001385	72.94	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	70.62	gold quality
bone marrow cell	CL:0002092	69.15	gold quality
pancreatic ductal cell	CL:0002079	67.92	silver quality
kidney epithelium	UBERON:0004819	67.80	gold quality
epithelium of nasopharynx	UBERON:0001951	67.29	gold quality
colonic epithelium	UBERON:0000397	65.72	silver quality
deltoid	UBERON:0001476	65.19	gold quality
epithelial cell of pancreas	CL:0000083	65.10	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	64.67	gold quality
nasal cavity epithelium	UBERON:0005384	64.09	gold quality
endothelial cell	CL:0000115	62.37	gold quality
metanephros	UBERON:0000081	62.26	gold quality
myocardium	UBERON:0002349	62.25	gold quality
muscle tissue	UBERON:0002385	62.07	silver quality
ganglionic eminence	UBERON:0004023	61.92	gold quality
layer of synovial tissue	UBERON:0007616	60.91	gold quality
quadriceps femoris	UBERON:0001377	59.50	gold quality
cardia of stomach	UBERON:0001162	59.26	gold quality
pharyngeal mucosa	UBERON:0000355	59.23	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.