LINC01208

Summary

LINC01208 (long intergenic non-protein coding RNA 1208, HGNC:49639) is a long non-coding RNA gene on chromosome 3q26.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49639
Approved symbol	LINC01208
Name	long intergenic non-protein coding RNA 1208
Location	3q26.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223715
Ensembl biotype	lncRNA
Entrez	100505547
RNAcentral	URS000075C55C — lncRNA, 822 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000421034, ENST00000428516, ENST00000434969, ENST00000652470, ENST00000657476, ENST00000785771, ENST00000785772, ENST00000785773, ENST00000785774, ENST00000794389, ENST00000794390, ENST00000794391, ENST00000794392, ENST00000794393, ENST00000794394

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000421034 — 6 exons

Exon	Start	End
ENSE00001632374	176634345	176634535
ENSE00001732501	176626275	176626346
ENSE00001790321	176629935	176630079
ENSE00001802272	176635441	176635623
ENSE00003864240	176636309	176636533
ENSE00003873477	176636647	176636779

Expression profiles

Bgee: expression breadth ubiquitous, 146 present calls, max score 91.72.

Top tissues by expression

230 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
secondary oocyte	CL:0000655	91.72	gold quality
oocyte	CL:0000023	91.71	gold quality
epithelial cell of pancreas	CL:0000083	80.19	gold quality
upper arm skin	UBERON:0004263	79.25	gold quality
pancreatic ductal cell	CL:0002079	78.35	silver quality
tibialis anterior	UBERON:0001385	77.52	silver quality
bone marrow cell	CL:0002092	76.10	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.05	gold quality
esophagus squamous epithelium	UBERON:0006920	75.82	gold quality
epithelium of mammary gland	UBERON:0003244	75.50	gold quality
mammary duct	UBERON:0001765	75.40	gold quality
sperm	CL:0000019	74.18	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.48	gold quality
ileal mucosa	UBERON:0000331	73.13	gold quality
heart right ventricle	UBERON:0002080	72.35	gold quality
colonic epithelium	UBERON:0000397	72.12	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	71.78	gold quality
buccal mucosa cell	CL:0002336	71.65	gold quality
vastus lateralis	UBERON:0001379	71.39	gold quality
amniotic fluid	UBERON:0000173	71.34	silver quality
quadriceps femoris	UBERON:0001377	71.34	gold quality
deltoid	UBERON:0001476	70.75	gold quality
left testis	UBERON:0004533	70.42	gold quality
biceps brachii	UBERON:0001507	70.11	gold quality
right testis	UBERON:0004534	69.68	gold quality
myocardium	UBERON:0002349	69.33	gold quality
cartilage tissue	UBERON:0002418	68.92	silver quality
pigmented layer of retina	UBERON:0001782	68.82	gold quality
palpebral conjunctiva	UBERON:0001812	68.68	silver quality
testis	UBERON:0000473	68.59	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.53

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.