LINC01209

Summary

LINC01209 (long intergenic non-protein coding RNA 1209, HGNC:49640) is a long non-coding RNA gene on chromosome 3q26.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49640
Approved symbol	LINC01209
Name	long intergenic non-protein coding RNA 1209
Location	3q26.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228308
Ensembl biotype	lncRNA
Entrez	101928684
RNAcentral	URS00007598F4 — lncRNA, 2413 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000451289, ENST00000651920

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000451289 — 2 exons

Exon	Start	End
ENSE00001643668	176814155	176815726
ENSE00001777734	176816174	176817001

Expression profiles

Bgee: expression breadth broad, 36 present calls, max score 65.51.

Top tissues by expression

157 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	65.51	silver quality
secondary oocyte	CL:0000655	58.96	gold quality
tendon	UBERON:0000043	52.86	gold quality
tendon of biceps brachii	UBERON:0008188	52.72	gold quality
monocyte	CL:0000576	51.80	silver quality
tonsil	UBERON:0002372	50.72	gold quality
medial globus pallidus	UBERON:0002477	47.51	gold quality
oocyte	CL:0000023	47.23	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	46.04	silver quality
tibial artery	UBERON:0007610	45.90	gold quality
globus pallidus	UBERON:0001875	45.81	gold quality
body of pancreas	UBERON:0001150	45.04	silver quality
aorta	UBERON:0000947	44.74	gold quality
adrenal tissue	UBERON:0018303	44.69	silver quality
right atrium auricular region	UBERON:0006631	44.20	gold quality
amniotic fluid	UBERON:0000173	43.69	gold quality
lymph node	UBERON:0000029	43.65	silver quality
lower esophagus muscularis layer	UBERON:0035833	43.58	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
ascending aorta	UBERON:0001496	43.29	silver quality
gastrocnemius	UBERON:0001388	43.25	silver quality
testis	UBERON:0000473	43.07	gold quality
pharyngeal mucosa	UBERON:0000355	42.78	gold quality
esophagus	UBERON:0001043	42.77	silver quality
pancreas	UBERON:0001264	42.60	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	42.27	silver quality
cardiac atrium	UBERON:0002081	42.11	silver quality
urinary bladder	UBERON:0001255	42.01	gold quality
muscle layer of sigmoid colon	UBERON:0035805	41.87	silver quality
left testis	UBERON:0004533	41.73	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.