LINC01210

Summary

LINC01210 (long intergenic non-protein coding RNA 1210, HGNC:49642) is a long non-coding RNA gene on chromosome 3q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49642
Approved symbol	LINC01210
Name	long intergenic non-protein coding RNA 1210
Location	3q22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000239513
Ensembl biotype	lncRNA
Entrez	100507274
RNAcentral	URS000075D823 — lncRNA, 1334 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 26 — 26 lncRNA

ENST00000465283, ENST00000469216, ENST00000471091, ENST00000478772, ENST00000652948, ENST00000654450, ENST00000654543, ENST00000654610, ENST00000655048, ENST00000660613, ENST00000660863, ENST00000661982, ENST00000662157, ENST00000662180, ENST00000664320, ENST00000666528, ENST00000667229, ENST00000667692, ENST00000671510, ENST00000774622, ENST00000774624, ENST00000774626, ENST00000774629, ENST00000774631, ENST00000774633, ENST00000774635

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000465283 — 5 exons

Exon	Start	End
ENSE00001834493	137774528	137774614
ENSE00001839210	137776282	137776404
ENSE00001884208	137775103	137775350
ENSE00003867414	137772124	137772282
ENSE00004140716	137777433	137777674

Expression profiles

Bgee: expression breadth broad, 53 present calls, max score 86.29.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0186 / max 20.7499, expressed in 3 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
38761	0.0143	3
38762	0.0043	3

Top tissues by expression

175 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.29	gold quality
heart right ventricle	UBERON:0002080	84.83	gold quality
left testis	UBERON:0004533	83.03	gold quality
testis	UBERON:0000473	80.97	gold quality
right testis	UBERON:0004534	80.79	gold quality
mucosa of paranasal sinus	UBERON:0005030	79.45	gold quality
superficial temporal artery	UBERON:0001614	77.39	gold quality
biceps brachii	UBERON:0001507	73.53	gold quality
sperm	CL:0000019	72.12	silver quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	71.81	gold quality
adult organism	UBERON:0007023	70.51	gold quality
upper leg skin	UBERON:0004262	69.00	silver quality
myocardium	UBERON:0002349	67.90	gold quality
tendon of biceps brachii	UBERON:0008188	67.63	silver quality
sural nerve	UBERON:0015488	66.75	gold quality
tibial nerve	UBERON:0001323	64.58	gold quality
skin of hip	UBERON:0001554	64.32	silver quality
ileal mucosa	UBERON:0000331	64.20	silver quality
tendon	UBERON:0000043	63.81	silver quality
deltoid	UBERON:0001476	60.59	gold quality
body of tongue	UBERON:0011876	60.44	silver quality
tibialis anterior	UBERON:0001385	60.03	silver quality
parotid gland	UBERON:0001831	59.53	gold quality
saphenous vein	UBERON:0007318	59.19	gold quality
saliva-secreting gland	UBERON:0001044	58.60	gold quality
superior surface of tongue	UBERON:0007371	58.39	silver quality
gingival epithelium	UBERON:0001949	58.06	gold quality
mouth mucosa	UBERON:0003729	57.22	gold quality
gingiva	UBERON:0001828	57.07	gold quality
oocyte	CL:0000023	56.99	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.44

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 2)

• silence of KLF4 could reverse regulatory effects of LINC01210 on cellular behaviors of ovarian cancer. (PMID:31514068)
• LINC01210 promotes malignant phenotypes of colorectal cancer through epigenetically upregulating SRSF3. (PMID:35462226)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.