LINC01213

Summary

LINC01213 (long intergenic non-protein coding RNA 1213, HGNC:49648) is a long non-coding RNA gene on chromosome 3q25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49648
Approved symbol	LINC01213
Name	long intergenic non-protein coding RNA 1213
Location	3q25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000244541
Ensembl biotype	lncRNA
Entrez	101927992
RNAcentral	URS000075D3C0 — lncRNA, 522 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 23 lncRNA

ENST00000472821, ENST00000472890, ENST00000487840, ENST00000489690, ENST00000498005, ENST00000662289, ENST00000664180, ENST00000665197, ENST00000716164, ENST00000716165, ENST00000716166, ENST00000716167, ENST00000725875, ENST00000725876, ENST00000725877, ENST00000725878, ENST00000725879, ENST00000725880, ENST00000725881, ENST00000725882, ENST00000725883, ENST00000725884, ENST00000725885

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000472821 — 3 exons

Exon	Start	End
ENSE00001913948	150124938	150125030
ENSE00004049821	150096438	150096597
ENSE00004049837	150150511	150150998

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 93.30.

Top tissues by expression

224 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	93.30	silver quality
ganglionic eminence	UBERON:0004023	64.79	gold quality
corpus epididymis	UBERON:0004359	60.78	gold quality
tibialis anterior	UBERON:0001385	60.52	silver quality
hindlimb stylopod muscle	UBERON:0004252	59.77	gold quality
pancreatic ductal cell	CL:0002079	58.59	silver quality
sural nerve	UBERON:0015488	58.45	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	58.39	gold quality
rectum	UBERON:0001052	57.00	gold quality
ileal mucosa	UBERON:0000331	56.90	silver quality
prostate gland	UBERON:0002367	56.42	gold quality
adult mammalian kidney	UBERON:0000082	56.35	gold quality
monocyte	CL:0000576	55.96	gold quality
adrenal tissue	UBERON:0018303	54.92	gold quality
calcaneal tendon	UBERON:0003701	54.90	silver quality
deltoid	UBERON:0001476	54.63	silver quality
epithelial cell of pancreas	CL:0000083	54.48	gold quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
muscle of leg	UBERON:0001383	53.95	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
cortex of kidney	UBERON:0001225	53.88	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
gastrocnemius	UBERON:0001388	53.41	gold quality
islet of Langerhans	UBERON:0000006	52.47	gold quality
kidney	UBERON:0002113	52.08	gold quality
urinary bladder	UBERON:0001255	52.05	gold quality
right adrenal gland cortex	UBERON:0035827	51.49	gold quality
esophagus mucosa	UBERON:0002469	51.29	gold quality
ectocervix	UBERON:0012249	51.26	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.94

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Study found that linc01213 was upregulated in tamoxifen-resistant MCF-7 breast cancer cells. However, linc01213 does not seem to be central regulator of tamoxifen adaption, but rather interferes with the regulation of migration. (PMID:30760083)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.