LINC01214

Summary

LINC01214 (long intergenic non-protein coding RNA 1214, HGNC:49650) is a long non-coding RNA gene on chromosome 3q25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49650
Approved symbol	LINC01214
Name	long intergenic non-protein coding RNA 1214
Location	3q25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000243550
Ensembl biotype	lncRNA
Entrez	101928022
RNAcentral	URS0000759A43 — lncRNA, 484 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 39 — 39 lncRNA

ENST00000471222, ENST00000665600, ENST00000670456, ENST00000692847, ENST00000716186, ENST00000716187, ENST00000716188, ENST00000716189, ENST00000716190, ENST00000749916, ENST00000749917, ENST00000749918, ENST00000749919, ENST00000749920, ENST00000749921, ENST00000749922, ENST00000749923, ENST00000749924, ENST00000749925, ENST00000749926, ENST00000749927, ENST00000749928, ENST00000749929, ENST00000749930, ENST00000749931, ENST00000749932, ENST00000749933, ENST00000749934, ENST00000749935, ENST00000749936, ENST00000749937, ENST00000749938, ENST00000749939, ENST00000749940, ENST00000749941, ENST00000749942, ENST00000749943, ENST00000749944, ENST00000749945

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000471222 — 4 exons

Exon	Start	End
ENSE00001870790	150266727	150266783
ENSE00001930702	150287344	150287418
ENSE00001952781	150265408	150265659
ENSE00003870299	150296468	150296605

Expression profiles

Bgee: expression breadth broad, 92 present calls, max score 92.73.

Top tissues by expression

92 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	92.73	gold quality
ectocervix	UBERON:0012249	78.38	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.91	silver quality
left testis	UBERON:0004533	71.44	gold quality
testis	UBERON:0000473	70.90	gold quality
right testis	UBERON:0004534	68.97	gold quality
vagina	UBERON:0000996	66.46	gold quality
skin of leg	UBERON:0001511	65.02	gold quality
sural nerve	UBERON:0015488	64.70	silver quality
mucosa of transverse colon	UBERON:0004991	64.43	gold quality
zone of skin	UBERON:0000014	63.50	gold quality
lower esophagus mucosa	UBERON:0035834	63.44	gold quality
left ovary	UBERON:0002119	63.01	gold quality
skin of abdomen	UBERON:0001416	61.01	gold quality
islet of Langerhans	UBERON:0000006	60.74	gold quality
liver	UBERON:0002107	60.59	gold quality
skeletal muscle tissue	UBERON:0001134	60.41	gold quality
esophagus mucosa	UBERON:0002469	58.95	gold quality
right lobe of liver	UBERON:0001114	58.75	gold quality
esophagus	UBERON:0001043	57.45	gold quality
multicellular organism	UBERON:0000468	55.84	gold quality
granulocyte	CL:0000094	53.82	gold quality
hindlimb stylopod muscle	UBERON:0004252	53.78	gold quality
blood	UBERON:0000178	53.50	gold quality
monocyte	CL:0000576	51.92	silver quality
prefrontal cortex	UBERON:0000451	51.57	gold quality
muscle of leg	UBERON:0001383	51.46	gold quality
gastrocnemius	UBERON:0001388	51.20	gold quality
fundus of stomach	UBERON:0001160	50.63	gold quality
kidney	UBERON:0002113	50.59	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.