LINC01215

Summary

LINC01215 (long intergenic non-protein coding RNA 1215, HGNC:49651) is a long non-coding RNA gene on chromosome 3q13.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49651
Approved symbol	LINC01215
Name	long intergenic non-protein coding RNA 1215
Location	3q13.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000271856
Ensembl biotype	lncRNA
Entrez	101929623
RNAcentral	URS000075A7A9 — lncRNA, 2609 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000607746, ENST00000829898, ENST00000829899, ENST00000829900, ENST00000829901, ENST00000829902, ENST00000829903, ENST00000829904

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000607746 — 3 exons

Exon	Start	End
ENSE00003697039	108135144	108135350
ENSE00004243783	108125645	108125908
ENSE00004243786	108136314	108138610

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 82.04.

FANTOM5 (CAGE): breadth broad, TPM avg 4.0477 / max 249.8577, expressed in 310 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
37809	4.0477	310

Top tissues by expression

209 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
lymph node	UBERON:0000029	82.04	gold quality
vermiform appendix	UBERON:0001154	78.74	gold quality
spleen	UBERON:0002106	78.53	gold quality
body of pancreas	UBERON:0001150	77.67	gold quality
granulocyte	CL:0000094	76.34	gold quality
tonsil	UBERON:0002372	76.07	gold quality
bone marrow	UBERON:0002371	75.74	gold quality
thymus	UBERON:0002370	74.76	gold quality
blood	UBERON:0000178	74.58	gold quality
bone marrow cell	CL:0002092	73.24	silver quality
ileal mucosa	UBERON:0000331	72.15	gold quality
leukocyte	CL:0000738	71.83	gold quality
epithelium of nasopharynx	UBERON:0001951	71.27	gold quality
monocyte	CL:0000576	70.98	gold quality
pancreas	UBERON:0001264	70.62	gold quality
caecum	UBERON:0001153	70.49	gold quality
small intestine Peyer’s patch	UBERON:0003454	62.94	gold quality
palpebral conjunctiva	UBERON:0001812	61.24	silver quality
superficial temporal artery	UBERON:0001614	60.81	gold quality
rectum	UBERON:0001052	60.27	gold quality
small intestine	UBERON:0002108	60.14	gold quality
mucosa of transverse colon	UBERON:0004991	55.96	gold quality
gall bladder	UBERON:0002110	55.19	gold quality
buccal mucosa cell	CL:0002336	54.91	gold quality
pancreatic ductal cell	CL:0002079	54.51	silver quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
nasal cavity mucosa	UBERON:0001826	54.26	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
epithelial cell of pancreas	CL:0000083	53.98	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.92

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.