LINC01216

Summary

LINC01216 (long intergenic non-protein coding RNA 1216, HGNC:41418) is a long non-coding RNA gene on chromosome 4q24.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41418
Approved symbol	LINC01216
Name	long intergenic non-protein coding RNA 1216
Location	4q24
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250223
Ensembl biotype	lncRNA
Entrez	100874275
RNAcentral	URS000022B8D7 — lncRNA, 824 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000515728

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000515728 — 4 exons

Exon	Start	End
ENSE00002055339	100665647	100665760
ENSE00002058468	100674019	100674271
ENSE00002061213	100675048	100675113
ENSE00002074270	100660279	100660669

Expression profiles

Bgee: expression breadth broad, 26 present calls, max score 82.22.

Top tissues by expression

26 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.22	silver quality
monocyte	CL:0000576	52.66	gold quality
prefrontal cortex	UBERON:0000451	50.92	gold quality
lower esophagus muscularis layer	UBERON:0035833	50.34	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.08	gold quality
lung	UBERON:0002048	45.99	gold quality
right hemisphere of cerebellum	UBERON:0014890	44.55	silver quality
amygdala	UBERON:0001876	44.27	gold quality
cerebellar hemisphere	UBERON:0002245	44.21	silver quality
ascending aorta	UBERON:0001496	43.93	silver quality
putamen	UBERON:0001874	43.87	gold quality
transverse colon	UBERON:0001157	43.70	silver quality
adult mammalian kidney	UBERON:0000082	41.50	silver quality
omental fat pad	UBERON:0010414	41.02	silver quality
nucleus accumbens	UBERON:0001882	40.92	silver quality
tibial artery	UBERON:0007610	39.59	silver quality
hypothalamus	UBERON:0001898	39.19	gold quality
caudate nucleus	UBERON:0001873	39.10	silver quality
testis	UBERON:0000473	37.84	gold quality
left testis	UBERON:0004533	37.73	gold quality
subcutaneous adipose tissue	UBERON:0002190	37.56	silver quality
upper lobe of left lung	UBERON:0008952	36.57	silver quality
myometrium	UBERON:0001296	36.09	silver quality
anterior cingulate cortex	UBERON:0009835	35.78	silver quality
right testis	UBERON:0004534	35.02	gold quality
gastrocnemius	UBERON:0001388	34.20	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.