LINC01222

Summary

LINC01222 (long intergenic non-protein coding RNA 1222, HGNC:49672) is a long non-coding RNA gene on chromosome 1q32.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49672
Approved symbol	LINC01222
Name	long intergenic non-protein coding RNA 1222
Location	1q32.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00000112
Ensembl gene	ENSG00000233410
Ensembl biotype	lncRNA
Entrez	102800316
RNAcentral	URS000075A9E3 — lncRNA, 768 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000427439, ENST00000814288

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427439 — 3 exons

Exon	Start	End
ENSE00001684183	199020818	199021037
ENSE00001722178	199006040	199007429
ENSE00001792426	199008394	199008568

Expression profiles

Bgee: expression breadth broad, 13 present calls, max score 81.37.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0809 / max 28.2431, expressed in 18 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
16550	0.0311	11
16549	0.0191	9
16547	0.0190	4
16548	0.0117	4

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	81.37	gold quality
superficial temporal artery	UBERON:0001614	76.58	gold quality
nasal cavity epithelium	UBERON:0005384	72.73	gold quality
parotid gland	UBERON:0001831	72.35	gold quality
endothelial cell	CL:0000115	65.47	gold quality
saliva-secreting gland	UBERON:0001044	64.08	gold quality
germinal epithelium of ovary	UBERON:0001304	63.09	gold quality
epithelium of nasopharynx	UBERON:0001951	62.49	silver quality
gingival epithelium	UBERON:0001949	62.28	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	62.24	gold quality
leukocyte	CL:0000738	60.70	gold quality
large intestine	UBERON:0000059	60.60	gold quality
heart left ventricle	UBERON:0002084	58.76	gold quality
gingiva	UBERON:0001828	58.75	gold quality
vastus lateralis	UBERON:0001379	58.24	gold quality
quadriceps femoris	UBERON:0001377	57.84	gold quality
colon	UBERON:0001155	57.76	gold quality
colonic mucosa	UBERON:0000317	57.71	gold quality
mucosa of paranasal sinus	UBERON:0005030	57.64	gold quality
ganglionic eminence	UBERON:0004023	57.54	silver quality
blood	UBERON:0000178	56.03	gold quality
corpus epididymis	UBERON:0004359	54.97	gold quality
mucosa of sigmoid colon	UBERON:0004993	54.93	gold quality
cauda epididymis	UBERON:0004360	54.66	gold quality
caput epididymis	UBERON:0004358	54.39	gold quality
sperm	CL:0000019	53.77	gold quality
upper leg skin	UBERON:0004262	53.62	silver quality
mammary duct	UBERON:0001765	53.49	gold quality
oocyte	CL:0000023	52.98	gold quality
bone marrow	UBERON:0002371	52.81	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.