LINC01229

Summary

LINC01229 (long intergenic non-protein coding RNA 1229, HGNC:49682) is a long non-coding RNA gene on chromosome 16q23.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49682
Approved symbol	LINC01229
Name	long intergenic non-protein coding RNA 1229
Location	16q23.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00024480
Ensembl gene	ENSG00000260876
Ensembl biotype	lncRNA
Entrez	101928248
RNAcentral	URS000075C4C0 — lncRNA, 995 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 51 — 51 lncRNA

ENST00000561510, ENST00000563360, ENST00000567665, ENST00000568751, ENST00000569164, ENST00000653222, ENST00000653629, ENST00000654126, ENST00000654418, ENST00000656256, ENST00000658021, ENST00000658102, ENST00000658367, ENST00000660492, ENST00000660867, ENST00000660877, ENST00000661087, ENST00000661887, ENST00000663559, ENST00000663824, ENST00000663905, ENST00000664391, ENST00000664722, ENST00000664812, ENST00000665091, ENST00000665206, ENST00000665592, ENST00000666087, ENST00000667006, ENST00000667860, ENST00000668170, ENST00000668234, ENST00000668311, ENST00000668552, ENST00000668897, ENST00000669543, ENST00000669552, ENST00000669642, ENST00000669736, ENST00000669947, ENST00000670230, ENST00000670441, ENST00000671582, ENST00000766709, ENST00000766710, ENST00000766711, ENST00000766712, ENST00000766714, ENST00000766715, ENST00000766716, ENST00000766717

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000561510 — 6 exons

Exon	Start	End
ENSE00002578846	79714815	79714887
ENSE00002606603	79796753	79796798
ENSE00002608001	79798439	79799090
ENSE00002611006	79797491	79797730
ENSE00002615600	79713847	79714134
ENSE00002626362	79795103	79795297

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 86.22.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1654 / max 146.0760, expressed in 48 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter ID	TPM avg	Samples expressed
155127	0.0692	22
155124	0.0578	17
155126	0.0179	1
155123	0.0155	4
155125	0.0051	1

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.22	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.59	gold quality
testis	UBERON:0000473	73.08	gold quality
left testis	UBERON:0004533	72.81	gold quality
right testis	UBERON:0004534	72.66	gold quality
skin of abdomen	UBERON:0001416	71.29	gold quality
sural nerve	UBERON:0015488	71.22	gold quality
zone of skin	UBERON:0000014	70.77	gold quality
quadriceps femoris	UBERON:0001377	70.38	gold quality
skin of leg	UBERON:0001511	70.20	gold quality
thymus	UBERON:0002370	68.79	silver quality
left ovary	UBERON:0002119	68.22	gold quality
ovary	UBERON:0000992	67.96	gold quality
cerebellar vermis	UBERON:0004720	67.75	gold quality
liver	UBERON:0002107	67.69	gold quality
right ovary	UBERON:0002118	67.07	gold quality
right lobe of liver	UBERON:0001114	66.31	gold quality
lymph node	UBERON:0000029	64.50	gold quality
skeletal muscle tissue	UBERON:0001134	64.34	silver quality
right adrenal gland cortex	UBERON:0035827	64.13	gold quality
right adrenal gland	UBERON:0001233	63.12	gold quality
left adrenal gland	UBERON:0001234	62.87	gold quality
adrenal gland	UBERON:0002369	62.34	gold quality
muscle tissue	UBERON:0002385	61.51	gold quality
left adrenal gland cortex	UBERON:0035825	61.39	gold quality
colonic epithelium	UBERON:0000397	61.28	silver quality
ventricular zone	UBERON:0003053	61.22	gold quality
popliteal artery	UBERON:0002250	61.17	gold quality
tibial artery	UBERON:0007610	61.15	gold quality
body of uterus	UBERON:0009853	60.74	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-GEOD-131882	yes	365.27
E-ANND-3	yes	3.73

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.