LINC01231

Summary

LINC01231 (long intergenic non-protein coding RNA 1231, HGNC:49688) is a long non-coding RNA gene on chromosome 9p24.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49688
Approved symbol	LINC01231
Name	long intergenic non-protein coding RNA 1231
Location	9p24.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236511
Ensembl biotype	lncRNA
Entrez	101929247
RNAcentral	URS000075C6B3 — lncRNA, 1512 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000452746, ENST00000654614, ENST00000657258, ENST00000659476, ENST00000663825, ENST00000791515, ENST00000791516, ENST00000791517

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000452746 — 4 exons

Exon	Start	End
ENSE00001668809	3181589	3181889
ENSE00001673620	3198186	3198517
ENSE00001708588	3186918	3187035
ENSE00001777685	3193460	3193594

Expression profiles

Bgee: expression breadth broad, 86 present calls, max score 73.90.

Top tissues by expression

184 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	73.90	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.06	gold quality
right uterine tube	UBERON:0001302	71.15	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	65.59	gold quality
epithelium of nasopharynx	UBERON:0001951	63.25	gold quality
mucosa of paranasal sinus	UBERON:0005030	62.95	gold quality
germinal epithelium of ovary	UBERON:0001304	60.33	gold quality
fallopian tube	UBERON:0003889	59.00	gold quality
cerebellar hemisphere	UBERON:0002245	58.88	gold quality
cerebellar cortex	UBERON:0002129	58.83	gold quality
mammary duct	UBERON:0001765	58.65	gold quality
cerebellum	UBERON:0002037	58.52	gold quality
right hemisphere of cerebellum	UBERON:0014890	58.48	gold quality
oviduct epithelium	UBERON:0004804	58.24	silver quality
bone marrow	UBERON:0002371	58.10	gold quality
adult mammalian kidney	UBERON:0000082	57.35	gold quality
jejunal mucosa	UBERON:0000399	57.07	gold quality
nasal cavity epithelium	UBERON:0005384	56.88	gold quality
liver	UBERON:0002107	56.65	gold quality
buccal mucosa cell	CL:0002336	56.44	gold quality
ganglionic eminence	UBERON:0004023	56.21	silver quality
jejunum	UBERON:0002115	55.95	gold quality
ventral tegmental area	UBERON:0002691	55.85	gold quality
lateral globus pallidus	UBERON:0002476	55.46	gold quality
seminal vesicle	UBERON:0000998	55.40	gold quality
layer of synovial tissue	UBERON:0007616	55.36	gold quality
small intestine	UBERON:0002108	55.28	gold quality
inferior vagus X ganglion	UBERON:0005363	55.26	gold quality
saphenous vein	UBERON:0007318	55.19	gold quality
superficial temporal artery	UBERON:0001614	55.16	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.64

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.