LINC01233

Summary

LINC01233 (long intergenic non-protein coding RNA 1233, HGNC:49756) is a long non-coding RNA gene on chromosome 19p12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49756
Approved symbol	LINC01233
Name	long intergenic non-protein coding RNA 1233
Location	19p12
Locus type	RNA, long non-coding
Status	Approved
Aliases	XLOC_013014
Ensembl gene	ENSG00000269364
Ensembl biotype	lncRNA
Entrez	100128139
RNAcentral	URS000075C99F — lncRNA, 613 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 20 — 20 lncRNA

ENST00000594200, ENST00000598832, ENST00000601708, ENST00000748667, ENST00000748668, ENST00000748669, ENST00000748670, ENST00000748671, ENST00000748672, ENST00000748673, ENST00000748674, ENST00000748675, ENST00000748676, ENST00000748677, ENST00000748678, ENST00000748679, ENST00000748680, ENST00000748681, ENST00000748682, ENST00000748683

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000594200 — 2 exons

Exon	Start	End
ENSE00004091693	22532612	22532914
ENSE00004091699	22533171	22533501

Expression profiles

Bgee: expression breadth ubiquitous, 111 present calls, max score 98.72.

Top tissues by expression

209 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	98.72	gold quality
left testis	UBERON:0004533	81.65	gold quality
right testis	UBERON:0004534	81.15	gold quality
testis	UBERON:0000473	78.39	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.79	gold quality
sperm	CL:0000019	74.66	gold quality
right uterine tube	UBERON:0001302	65.59	gold quality
monocyte	CL:0000576	55.90	gold quality
body of pancreas	UBERON:0001150	54.96	gold quality
pancreas	UBERON:0001264	54.10	gold quality
prefrontal cortex	UBERON:0000451	53.55	gold quality
islet of Langerhans	UBERON:0000006	53.25	gold quality
thyroid gland	UBERON:0002046	52.81	gold quality
right ovary	UBERON:0002118	52.68	gold quality
left lobe of thyroid gland	UBERON:0001120	52.27	gold quality
adrenal tissue	UBERON:0018303	51.78	gold quality
left ovary	UBERON:0002119	51.51	gold quality
right lobe of thyroid gland	UBERON:0001119	51.08	gold quality
adult mammalian kidney	UBERON:0000082	50.58	gold quality
muscle of leg	UBERON:0001383	50.45	gold quality
adult organism	UBERON:0007023	49.77	silver quality
ovary	UBERON:0000992	49.67	gold quality
gastrocnemius	UBERON:0001388	49.46	gold quality
right hemisphere of cerebellum	UBERON:0014890	48.64	gold quality
right lobe of liver	UBERON:0001114	48.53	gold quality
endocervix	UBERON:0000458	48.21	gold quality
lower lobe of lung	UBERON:0008949	48.17	silver quality
cerebellar hemisphere	UBERON:0002245	47.48	gold quality
corpus epididymis	UBERON:0004359	47.18	silver quality
tibial artery	UBERON:0007610	46.50	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.