LINC01237

Summary

LINC01237 (long intergenic non-protein coding RNA 1237, HGNC:49793) is a long non-coding RNA gene on chromosome 2q37.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49793
Approved symbol	LINC01237
Name	long intergenic non-protein coding RNA 1237
Location	2q37.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233806
Ensembl biotype	lncRNA
Entrez	101927289
RNAcentral	URS000075E1A2 — lncRNA, 576 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 41 — 40 lncRNA, 1 retained_intron

ENST00000415434, ENST00000416204, ENST00000426962, ENST00000429456, ENST00000429947, ENST00000430555, ENST00000439601, ENST00000451070, ENST00000457686, ENST00000685688, ENST00000687670, ENST00000690485, ENST00000691382, ENST00000693709, ENST00000701629, ENST00000702061, ENST00000715650, ENST00000796994, ENST00000796995, ENST00000796996, ENST00000796997, ENST00000796998, ENST00000796999, ENST00000797000, ENST00000797001, ENST00000797002, ENST00000797003, ENST00000797004, ENST00000797005, ENST00000797006, ENST00000797007, ENST00000797008, ENST00000797009, ENST00000797010, ENST00000797011, ENST00000797012, ENST00000797013, ENST00000797014, ENST00000797015, ENST00000797016, ENST00000797017

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415434 — 4 exons

Exon	Start	End
ENSE00001594320	242078460	242078722
ENSE00001722851	241965927	241966047
ENSE00001755167	241881366	241881478
ENSE00001777865	241882560	241882635

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 87.82.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4.6925 / max 142.0891, expressed in 1072 samples.

FANTOM5 promoters (8 alternative TSS)

Promoter ID	TPM avg	Samples expressed
26596	3.6301	997
26598	0.5795	242
26602	0.1462	74
26597	0.1157	56
26601	0.1112	44
26599	0.0614	31
26600	0.0485	21
26605	0.0230	4

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
body of pancreas	UBERON:0001150	87.82	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.87	gold quality
tonsil	UBERON:0002372	80.56	gold quality
pancreas	UBERON:0001264	79.93	gold quality
body of uterus	UBERON:0009853	79.04	gold quality
myometrium	UBERON:0001296	77.72	gold quality
bone marrow cell	CL:0002092	77.29	gold quality
lymph node	UBERON:0000029	76.46	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.84	gold quality
vermiform appendix	UBERON:0001154	75.67	gold quality
endocervix	UBERON:0000458	75.61	gold quality
uterine cervix	UBERON:0000002	75.06	gold quality
stromal cell of endometrium	CL:0002255	75.04	gold quality
right lobe of thyroid gland	UBERON:0001119	74.52	gold quality
prostate gland	UBERON:0002367	74.41	gold quality
left uterine tube	UBERON:0001303	74.21	gold quality
ectocervix	UBERON:0012249	73.53	gold quality
bone marrow	UBERON:0002371	73.36	gold quality
colonic epithelium	UBERON:0000397	72.57	gold quality
sural nerve	UBERON:0015488	72.36	gold quality
left lobe of thyroid gland	UBERON:0001120	72.23	gold quality
thyroid gland	UBERON:0002046	72.23	gold quality
cortical plate	UBERON:0005343	72.18	gold quality
endometrium	UBERON:0001295	72.08	gold quality
right ovary	UBERON:0002118	71.44	gold quality
left ovary	UBERON:0002119	71.26	gold quality
ovary	UBERON:0000992	71.14	gold quality
granulocyte	CL:0000094	71.00	gold quality
saliva-secreting gland	UBERON:0001044	69.99	gold quality
spleen	UBERON:0002106	69.67	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.85

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.