LINC01241

Summary

LINC01241 (long intergenic non-protein coding RNA 1241, HGNC:49804) is a long non-coding RNA gene on chromosome 9p21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49804
Approved symbol	LINC01241
Name	long intergenic non-protein coding RNA 1241
Location	9p21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236306
Ensembl biotype	lncRNA
Entrez	101929582
RNAcentral	URS000075DE7D — lncRNA, 1253 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000423326, ENST00000627303, ENST00000654259, ENST00000655503, ENST00000663468, ENST00000665756, ENST00000668254, ENST00000758796

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000423326 — 6 exons

Exon	Start	End
ENSE00001730531	25780416	25780617
ENSE00001750237	25780056	25780168
ENSE00001766386	25784415	25784616
ENSE00003765898	25798745	25798943
ENSE00003766745	25812621	25812968
ENSE00003770746	25798034	25798206

Expression profiles

Bgee: expression breadth broad, 41 present calls, max score 82.62.

Top tissues by expression

164 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.62	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.57	gold quality
left testis	UBERON:0004533	68.35	gold quality
right testis	UBERON:0004534	67.07	gold quality
testis	UBERON:0000473	66.39	gold quality
gastrocnemius	UBERON:0001388	58.41	gold quality
monocyte	CL:0000576	55.89	gold quality
islet of Langerhans	UBERON:0000006	53.42	gold quality
mammary duct	UBERON:0001765	52.37	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.25	gold quality
sperm	CL:0000019	52.10	gold quality
upper leg skin	UBERON:0004262	50.24	silver quality
corpus callosum	UBERON:0002336	47.34	silver quality
body of stomach	UBERON:0001161	47.00	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	46.67	gold quality
fundus of stomach	UBERON:0001160	46.61	gold quality
saphenous vein	UBERON:0007318	45.49	gold quality
popliteal artery	UBERON:0002250	44.93	silver quality
tibial artery	UBERON:0007610	44.72	silver quality
anatomical system	UBERON:0000467	44.62	gold quality
material anatomical entity	UBERON:0000465	44.28	gold quality
multicellular organism	UBERON:0000468	44.27	gold quality
aorta	UBERON:0000947	44.10	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
middle temporal gyrus	UBERON:0002771	43.10	gold quality
substantia nigra pars compacta	UBERON:0001965	42.88	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
vastus lateralis	UBERON:0001379	42.47	gold quality
quadriceps femoris	UBERON:0001377	42.41	gold quality
pancreas	UBERON:0001264	42.34	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.77

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.