LINC01243

Summary

LINC01243 (long intergenic non-protein coding RNA 1243, HGNC:49814) is a long non-coding RNA gene on chromosome 9p21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49814
Approved symbol	LINC01243
Name	long intergenic non-protein coding RNA 1243
Location	9p21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260720
Ensembl biotype	lncRNA
Entrez	101929620
RNAcentral	URS0000A76DBA — lncRNA, 751 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000562065

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000562065 — 2 exons

Exon	Start	End
ENSE00002578072	31371611	31372199
ENSE00002583646	31381359	31381490

Expression profiles

Bgee: expression breadth broad, 11 present calls, max score 91.13.

Top tissues by expression

169 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.13	gold quality
buccal mucosa cell	CL:0002336	74.87	gold quality
monocyte	CL:0000576	51.99	silver quality
islet of Langerhans	UBERON:0000006	49.24	gold quality
skin of hip	UBERON:0001554	44.44	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
lower lobe of lung	UBERON:0008949	43.04	silver quality
upper lobe of lung	UBERON:0008948	42.92	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
blood	UBERON:0000178	42.16	gold quality
adrenal gland	UBERON:0002369	42.06	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
pancreas	UBERON:0001264	41.83	silver quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
prefrontal cortex	UBERON:0000451	41.35	gold quality
adult mammalian kidney	UBERON:0000082	41.34	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
cardiac ventricle	UBERON:0002082	41.15	gold quality
bone marrow	UBERON:0002371	41.14	gold quality
skeletal muscle tissue	UBERON:0001134	41.10	gold quality
palpebral conjunctiva	UBERON:0001812	41.10	gold quality
mucosa of paranasal sinus	UBERON:0005030	40.98	gold quality
upper leg skin	UBERON:0004262	40.96	silver quality
spleen	UBERON:0002106	40.74	silver quality
amniotic fluid	UBERON:0000173	40.69	gold quality
heart	UBERON:0000948	40.64	gold quality
nasal cavity mucosa	UBERON:0001826	40.63	gold quality
jejunal mucosa	UBERON:0000399	40.59	gold quality
endometrium	UBERON:0001295	40.57	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.