LINC01250

Summary

LINC01250 (long intergenic non-protein coding RNA 1250, HGNC:49844) is a long non-coding RNA gene on chromosome 2p25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49844
Approved symbol	LINC01250
Name	long intergenic non-protein coding RNA 1250
Location	2p25.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ37991
Ensembl gene	ENSG00000234423
Ensembl biotype	lncRNA
Entrez	101927554
RNAcentral	URS000023352F — lncRNA, 2344 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 20 — 20 lncRNA

ENST00000419347, ENST00000425776, ENST00000457478, ENST00000667683, ENST00000740420, ENST00000740421, ENST00000740422, ENST00000740423, ENST00000740424, ENST00000740425, ENST00000740426, ENST00000740427, ENST00000740428, ENST00000740429, ENST00000740430, ENST00000740431, ENST00000740432, ENST00000740433, ENST00000740434, ENST00000740672

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419347 — 2 exons

Exon	Start	End
ENSE00001691813	3145547	3145780
ENSE00001796838	3131985	3132166

Expression profiles

Bgee: expression breadth broad, 90 present calls, max score 83.72.

Top tissues by expression

90 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.72	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	71.31	gold quality
nucleus accumbens	UBERON:0001882	70.93	gold quality
putamen	UBERON:0001874	69.53	gold quality
cortical plate	UBERON:0005343	69.21	gold quality
caudate nucleus	UBERON:0001873	68.78	gold quality
superior frontal gyrus	UBERON:0002661	66.21	gold quality
right frontal lobe	UBERON:0002810	66.02	gold quality
Brodmann (1909) area 9	UBERON:0013540	64.39	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	63.78	gold quality
frontal cortex	UBERON:0001870	63.62	gold quality
cerebral cortex	UBERON:0000956	62.20	gold quality
brain	UBERON:0000955	61.96	gold quality
primary visual cortex	UBERON:0002436	61.93	gold quality
prefrontal cortex	UBERON:0000451	61.34	gold quality
endocervix	UBERON:0000458	60.96	gold quality
pituitary gland	UBERON:0000007	60.01	gold quality
adenohypophysis	UBERON:0002196	59.66	gold quality
anterior cingulate cortex	UBERON:0009835	59.57	gold quality
Ammon’s horn	UBERON:0001954	58.44	gold quality
multicellular organism	UBERON:0000468	55.79	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.28	gold quality
duodenum	UBERON:0002114	55.24	gold quality
corpus callosum	UBERON:0002336	54.96	gold quality
bone marrow	UBERON:0002371	53.50	gold quality
lymph node	UBERON:0000029	52.84	gold quality
amygdala	UBERON:0001876	51.56	gold quality
kidney	UBERON:0002113	51.31	gold quality
monocyte	CL:0000576	50.35	silver quality
right hemisphere of cerebellum	UBERON:0014890	49.72	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-HCAD-35	yes	493.35
E-ANND-3	yes	4.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.