LINC01252

Summary

LINC01252 (long intergenic non-protein coding RNA 1252, HGNC:27888) is a long non-coding RNA gene on chromosome 12p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27888
Approved symbol	LINC01252
Name	long intergenic non-protein coding RNA 1252
Location	12p13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000247157
Ensembl biotype	lncRNA
Entrez	338817
RNAcentral	URS000075C0A6 — lncRNA, 3684 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000499291, ENST00000541162, ENST00000545239, ENST00000665563, ENST00000667189, ENST00000824801, ENST00000824802, ENST00000824803, ENST00000824804

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000499291 — 8 exons

Exon	Start	End
ENSE00001789272	11555255	11557216
ENSE00001961155	11552580	11552693
ENSE00001970124	11548030	11548360
ENSE00001978340	11563701	11564403
ENSE00001982252	11549590	11549721
ENSE00001987442	11553849	11554070
ENSE00001989748	11553566	11553682
ENSE00001992039	11559291	11559382

Expression profiles

Bgee: expression breadth ubiquitous, 163 present calls, max score 86.69.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0556 / max 18.1146, expressed in 12 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter ID	TPM avg	Samples expressed
124237	0.0159	7
124239	0.0155	9
124240	0.0118	4
206625	0.0065	4
124238	0.0058	4

Top tissues by expression

240 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
secondary oocyte	CL:0000655	86.69	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.60	gold quality
oocyte	CL:0000023	74.40	gold quality
stromal cell of endometrium	CL:0002255	73.67	gold quality
right adrenal gland cortex	UBERON:0035827	73.30	gold quality
right adrenal gland	UBERON:0001233	73.26	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.71	gold quality
bone marrow cell	CL:0002092	72.25	gold quality
left adrenal gland cortex	UBERON:0035825	71.68	gold quality
left adrenal gland	UBERON:0001234	71.51	gold quality
right lobe of liver	UBERON:0001114	70.90	gold quality
adrenal cortex	UBERON:0001235	69.81	gold quality
adrenal gland	UBERON:0002369	69.62	gold quality
adrenal tissue	UBERON:0018303	69.25	gold quality
colonic epithelium	UBERON:0000397	68.21	silver quality
granulocyte	CL:0000094	67.64	gold quality
body of pancreas	UBERON:0001150	66.06	gold quality
right frontal lobe	UBERON:0002810	65.97	gold quality
Brodmann (1909) area 9	UBERON:0013540	65.90	gold quality
popliteal artery	UBERON:0002250	65.70	gold quality
tibial artery	UBERON:0007610	65.66	gold quality
caudate nucleus	UBERON:0001873	65.52	gold quality
nucleus accumbens	UBERON:0001882	65.37	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	64.72	gold quality
anterior cingulate cortex	UBERON:0009835	64.55	gold quality
putamen	UBERON:0001874	64.42	gold quality
prefrontal cortex	UBERON:0000451	64.29	gold quality
omental fat pad	UBERON:0010414	63.14	gold quality
peritoneum	UBERON:0002358	63.08	gold quality
ganglionic eminence	UBERON:0004023	62.87	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	4.32

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.