LINC01254

Summary

LINC01254 (long intergenic non-protein coding RNA 1254, HGNC:49870) is a long non-coding RNA gene on chromosome 18p11.22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49870
Approved symbol	LINC01254
Name	long intergenic non-protein coding RNA 1254
Location	18p11.22
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260913
Ensembl biotype	lncRNA
Entrez	101927350
RNAcentral	URS000075C2EF — lncRNA, 1921 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000566225, ENST00000567609, ENST00000754755, ENST00000754756, ENST00000754757, ENST00000754758, ENST00000754759, ENST00000754760, ENST00000754761, ENST00000754762, ENST00000754763

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000566225 — 1 exons

Exon	Start	End
ENSE00002607589	10411608	10414515

Expression profiles

Bgee: expression breadth broad, 32 present calls, max score 80.69.

Top tissues by expression

159 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	80.69	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.47	gold quality
ganglionic eminence	UBERON:0004023	54.35	silver quality
skin of abdomen	UBERON:0001416	53.70	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.75	silver quality
sperm	CL:0000019	52.25	gold quality
skin of leg	UBERON:0001511	51.15	gold quality
zone of skin	UBERON:0000014	50.88	gold quality
muscle of leg	UBERON:0001383	46.64	silver quality
upper lobe of lung	UBERON:0008948	45.84	silver quality
islet of Langerhans	UBERON:0000006	45.72	silver quality
lower lobe of lung	UBERON:0008949	45.65	silver quality
gastrocnemius	UBERON:0001388	44.45	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
tibial nerve	UBERON:0001323	43.25	gold quality
amniotic fluid	UBERON:0000173	42.95	gold quality
anatomical system	UBERON:0000467	42.77	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	42.69	gold quality
material anatomical entity	UBERON:0000465	42.67	gold quality
multicellular organism	UBERON:0000468	42.65	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
lymph node	UBERON:0000029	42.44	gold quality
ascending aorta	UBERON:0001496	42.35	silver quality
jejunum	UBERON:0002115	42.35	gold quality
spinal cord	UBERON:0002240	42.16	gold quality
blood	UBERON:0000178	42.12	gold quality
duodenum	UBERON:0002114	42.06	silver quality
vastus lateralis	UBERON:0001379	42.00	gold quality
middle temporal gyrus	UBERON:0002771	41.97	gold quality
quadriceps femoris	UBERON:0001377	41.95	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.