LINC01258

Summary

LINC01258 (long intergenic non-protein coding RNA 1258, HGNC:49898) is a long non-coding RNA gene on chromosome 4p14.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49898
Approved symbol	LINC01258
Name	long intergenic non-protein coding RNA 1258
Location	4p14
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249534
Ensembl biotype	lncRNA
Entrez	101928776
RNAcentral	URS00001A614C — lncRNA, 2059 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000512517, ENST00000653888, ENST00000669996, ENST00000774213

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000512517 — 8 exons

Exon	Start	End
ENSE00002022007	38453223	38453921
ENSE00002032564	38431204	38431324
ENSE00002040700	38523103	38523180
ENSE00002042497	38420662	38421312
ENSE00002046534	38451175	38451239
ENSE00002057044	38452573	38452814
ENSE00002073483	38449944	38450040
ENSE00002079895	38493993	38494098

Expression profiles

Bgee: expression breadth broad, 58 present calls, max score 60.88.

Top tissues by expression

58 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.88	gold quality
tonsil	UBERON:0002372	57.96	silver quality
myometrium	UBERON:0001296	52.83	gold quality
blood	UBERON:0000178	51.48	silver quality
lymph node	UBERON:0000029	49.98	silver quality
prefrontal cortex	UBERON:0000451	48.65	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.29	gold quality
duodenum	UBERON:0002114	47.99	silver quality
small intestine	UBERON:0002108	47.32	silver quality
calcaneal tendon	UBERON:0003701	47.19	silver quality
placenta	UBERON:0001987	47.13	silver quality
adrenal gland	UBERON:0002369	47.09	silver quality
islet of Langerhans	UBERON:0000006	47.01	silver quality
endometrium	UBERON:0001295	46.90	silver quality
heart	UBERON:0000948	46.71	silver quality
anterior cingulate cortex	UBERON:0009835	46.68	silver quality
body of pancreas	UBERON:0001150	45.81	silver quality
ovary	UBERON:0000992	45.41	silver quality
saliva-secreting gland	UBERON:0001044	44.90	gold quality
heart left ventricle	UBERON:0002084	44.86	silver quality
tibial artery	UBERON:0007610	44.23	silver quality
prostate gland	UBERON:0002367	44.20	silver quality
right atrium auricular region	UBERON:0006631	44.20	gold quality
gastrocnemius	UBERON:0001388	44.11	silver quality
right lobe of thyroid gland	UBERON:0001119	43.24	silver quality
minor salivary gland	UBERON:0001830	43.07	gold quality
adult mammalian kidney	UBERON:0000082	42.07	silver quality
omental fat pad	UBERON:0010414	41.68	silver quality
Ammon’s horn	UBERON:0001954	41.43	silver quality
Brodmann (1909) area 9	UBERON:0013540	41.38	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.09

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.