LINC01262

Summary

LINC01262 (long intergenic non-protein coding RNA 1262, HGNC:50275) is a long non-coding RNA gene on chromosome 4q35.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50275
Approved symbol	LINC01262
Name	long intergenic non-protein coding RNA 1262
Location	4q35.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_l2_00021807, RP11-462G22.1
Ensembl gene	ENSG00000250739
Ensembl biotype	lncRNA
Entrez	101928971
RNAcentral	URS000075D4A2 — lncRNA, 878 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000513681, ENST00000762499, ENST00000762500, ENST00000762501, ENST00000762502

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000513681 — 3 exons

Exon	Start	End
ENSE00002026084	189659605	189659729
ENSE00002065684	189660942	189661486
ENSE00002069398	189659926	189660134

Expression profiles

Bgee: expression breadth broad, 62 present calls, max score 90.86.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0852 / max 17.3876, expressed in 30 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
50968	0.0680	27
50969	0.0172	7

Top tissues by expression

62 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.86	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.78	gold quality
ovary	UBERON:0000992	55.59	gold quality
left ovary	UBERON:0002119	55.49	gold quality
right ovary	UBERON:0002118	55.36	gold quality
monocyte	CL:0000576	55.28	gold quality
skeletal muscle tissue	UBERON:0001134	54.48	gold quality
right testis	UBERON:0004534	54.28	gold quality
testis	UBERON:0000473	53.99	gold quality
left testis	UBERON:0004533	53.13	gold quality
blood	UBERON:0000178	52.85	silver quality
calcaneal tendon	UBERON:0003701	52.65	silver quality
sural nerve	UBERON:0015488	51.13	silver quality
pancreas	UBERON:0001264	51.05	gold quality
thyroid gland	UBERON:0002046	51.02	gold quality
placenta	UBERON:0001987	50.32	gold quality
multicellular organism	UBERON:0000468	50.12	gold quality
bone marrow	UBERON:0002371	49.85	silver quality
prefrontal cortex	UBERON:0000451	48.80	silver quality
islet of Langerhans	UBERON:0000006	48.65	gold quality
superior frontal gyrus	UBERON:0002661	45.93	silver quality
adult mammalian kidney	UBERON:0000082	45.83	silver quality
lung	UBERON:0002048	45.65	gold quality
heart left ventricle	UBERON:0002084	45.53	silver quality
left adrenal gland	UBERON:0001234	45.16	silver quality
heart	UBERON:0000948	45.04	silver quality
muscle of leg	UBERON:0001383	45.00	gold quality
pituitary gland	UBERON:0000007	43.85	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	43.59	silver quality
nucleus accumbens	UBERON:0001882	43.22	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.09

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.