LINC01275

Summary

LINC01275 (long intergenic non-protein coding RNA 1275, HGNC:50331) is a long non-coding RNA gene on chromosome 20q13.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50331
Approved symbol	LINC01275
Name	long intergenic non-protein coding RNA 1275
Location	20q13.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237595
Ensembl biotype	lncRNA
Entrez	101927512
RNAcentral	URS00026A1D75 — lncRNA, 960 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000435301, ENST00000615503, ENST00000652554, ENST00000658174, ENST00000669734, ENST00000670975, ENST00000684980, ENST00000691889, ENST00000768754, ENST00000768755, ENST00000768756, ENST00000768757, ENST00000768758, ENST00000768759, ENST00000768760, ENST00000768761, ENST00000768762

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000435301 — 2 exons

Exon	Start	End
ENSE00001685021	50163464	50164123
ENSE00001777227	50166030	50166102

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 93.31.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2669 / max 39.9712, expressed in 111 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
187830	0.2669	111

Top tissues by expression

123 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cerebellar vermis	UBERON:0004720	93.31	gold quality
quadriceps femoris	UBERON:0001377	92.36	gold quality
thymus	UBERON:0002370	85.20	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.74	gold quality
left testis	UBERON:0004533	71.84	gold quality
testis	UBERON:0000473	71.24	gold quality
right testis	UBERON:0004534	70.69	gold quality
apex of heart	UBERON:0002098	70.35	gold quality
bone marrow cell	CL:0002092	68.05	silver quality
sural nerve	UBERON:0015488	65.86	gold quality
heart left ventricle	UBERON:0002084	64.86	gold quality
left adrenal gland	UBERON:0001234	64.36	gold quality
adrenal gland	UBERON:0002369	64.16	gold quality
left adrenal gland cortex	UBERON:0035825	64.15	gold quality
right adrenal gland	UBERON:0001233	64.02	gold quality
colonic epithelium	UBERON:0000397	63.72	silver quality
right adrenal gland cortex	UBERON:0035827	63.09	gold quality
adrenal tissue	UBERON:0018303	62.38	gold quality
bone marrow	UBERON:0002371	61.76	silver quality
heart	UBERON:0000948	61.26	gold quality
skeletal muscle tissue	UBERON:0001134	60.29	silver quality
stromal cell of endometrium	CL:0002255	60.09	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.98	gold quality
right atrium auricular region	UBERON:0006631	58.64	gold quality
monocyte	CL:0000576	58.36	gold quality
liver	UBERON:0002107	56.86	gold quality
calcaneal tendon	UBERON:0003701	56.36	gold quality
blood	UBERON:0000178	55.38	gold quality
right lobe of liver	UBERON:0001114	55.38	gold quality
urinary bladder	UBERON:0001255	55.21	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.57

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.