LINC01277

Summary

LINC01277 (long intergenic non-protein coding RNA 1277, HGNC:50334) is a long non-coding RNA gene on chromosome 6q24.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50334
Approved symbol	LINC01277
Name	long intergenic non-protein coding RNA 1277
Location	6q24.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229017
Ensembl biotype	lncRNA
Entrez	100507489
RNAcentral	URS000075ACF8 — lncRNA, 1903 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 22 — 22 lncRNA

ENST00000419957, ENST00000446115, ENST00000454588, ENST00000653679, ENST00000657496, ENST00000657620, ENST00000661404, ENST00000662381, ENST00000666199, ENST00000668463, ENST00000670340, ENST00000823546, ENST00000823547, ENST00000823548, ENST00000823549, ENST00000823550, ENST00000823551, ENST00000823552, ENST00000823553, ENST00000823554, ENST00000823555, ENST00000823556

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419957 — 3 exons

Exon	Start	End
ENSE00001711832	143036989	143038077
ENSE00001750292	142966421	142967441
ENSE00001755700	143021666	143021953

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 83.37.

Top tissues by expression

129 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.37	gold quality
left testis	UBERON:0004533	76.54	gold quality
testis	UBERON:0000473	76.24	gold quality
right testis	UBERON:0004534	74.38	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.62	gold quality
calcaneal tendon	UBERON:0003701	72.53	gold quality
right lobe of liver	UBERON:0001114	68.25	gold quality
liver	UBERON:0002107	67.88	gold quality
nucleus accumbens	UBERON:0001882	67.22	gold quality
cortical plate	UBERON:0005343	66.93	gold quality
bone marrow cell	CL:0002092	65.26	silver quality
ventricular zone	UBERON:0003053	65.16	gold quality
skeletal muscle tissue	UBERON:0001134	64.75	gold quality
primary visual cortex	UBERON:0002436	63.00	gold quality
caudate nucleus	UBERON:0001873	62.40	gold quality
muscle of leg	UBERON:0001383	61.64	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.09	gold quality
cerebellar hemisphere	UBERON:0002245	60.86	gold quality
cerebellar cortex	UBERON:0002129	60.85	gold quality
gastrocnemius	UBERON:0001388	60.83	gold quality
cerebellum	UBERON:0002037	60.83	gold quality
putamen	UBERON:0001874	60.80	gold quality
ganglionic eminence	UBERON:0004023	60.72	gold quality
right hemisphere of cerebellum	UBERON:0014890	60.31	gold quality
superior frontal gyrus	UBERON:0002661	60.27	gold quality
brain	UBERON:0000955	59.92	gold quality
Brodmann (1909) area 9	UBERON:0013540	59.83	gold quality
hypothalamus	UBERON:0001898	59.70	gold quality
prefrontal cortex	UBERON:0000451	59.48	gold quality
frontal cortex	UBERON:0001870	59.24	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.18

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.